LOCUS       CP024485                4228 bp    DNA     circular BCT 06-NOV-2017
DEFINITION  Klebsiella pneumoniae strain INF322 plasmid unnamed3, complete
            sequence.
ACCESSION   CP024485
VERSION     CP024485.1
DBLINK      BioProject: PRJNA351909
            BioSample: SAMEA3357193
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4228)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Antimicrobial resistant Klebsiella pneumoniae carriage and infection
            in specialized geriatric care wards linked to acquisition in the
            referring hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4228)
  AUTHORS   Gorrie,C.L., Mirceta,M., Wick,R., Judd,L.M., Wyres,K.L.,
            Thomson,N.R., Strugnell,R.A., Pratt,N.F., Garlic,J.S., Watson,K.M.,
            Hunter,P.C., McGloughlin,S.A., Spelman,D.W., Jenney,A.W.J. and
            Holt,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2017) Biochemistry and Molecular Biology,
            University of Melbourne, Flemington Road, Parkville, Victoria 3052,
            Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-JUN-2017
            Assembly Method                   :: Unicycler v. 0.4.0
            Assembly Name                     :: INF322
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 113x
            Sequencing Technology             :: Illumina HiSeq and ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/30/2017 11:14:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,722
            CDS (total)                       :: 5,599
            Genes (coding)                    :: 5,395
            CDS (coding)                      :: 5,395
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 90 of 204
            Pseudo Genes (incomplete)         :: 110 of 204
            Pseudo Genes (internal stop)      :: 52 of 204
            Pseudo Genes (multiple problems)  :: 41 of 204
            ##Genome-Annotation-Data-END##
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4228
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="INF322"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
     gene            1..99
                     /locus_tag="CTI52_28500"
                     /pseudo=""
     CDS             1..99
                     /locus_tag="CTI52_28500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004200378.1"
                     /note="internal stop; incomplete; partial on complete
                     genome; missing start; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /name="glycosyl transferase"
     gene            56..762
                     /locus_tag="CTI52_28505"
                     /pseudo=""
     CDS             56..762
                     /locus_tag="CTI52_28505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     gene            complement(1110..1361)
                     /locus_tag="CTI52_28510"
     CDS             complement(1110..1361)
                     /locus_tag="CTI52_28510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="ATQ91708.1"
                     /translation="MLKTGFPAAPATLHGHAINCVPVHRFRMGSTPETGLTLAEWREFS
                     RYALACILMHAVKTEPARFWRVFGWFVACFTGFPSETP"
                     /name="hypothetical protein"
     gene            complement(1806..2207)
                     /locus_tag="CTI52_28515"
     CDS             complement(1806..2207)
                     /locus_tag="CTI52_28515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="ATQ91709.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKTGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNILLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="DNA-binding protein"
     gene            complement(2207..2398)
                     /locus_tag="CTI52_28520"
     CDS             complement(2207..2398)
                     /locus_tag="CTI52_28520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="ATQ91710.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEELHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(3195..3901)
                     /locus_tag="CTI52_28525"
                     /pseudo=""
     CDS             complement(3195..3901)
                     /locus_tag="CTI52_28525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     gene            complement(3858..3956)
                     /locus_tag="CTI52_28530"
                     /pseudo=""
     CDS             complement(3858..3956)
                     /locus_tag="CTI52_28530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004200378.1"
                     /note="internal stop; incomplete; partial on complete
                     genome; missing start; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /name="glycosyl transferase"
     Typing          2575..2959
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.487"
                     /coverage="89.0"
                     /evalue="2.97e-154"
ORIGIN
        1 ggtgatgctg ccaacttact gatttagtgt atgatggtgt ttttgaggtg ctccagtggc
       61 ttctgtttct atcagctgtc cctcctgttc agctactgac ggggtggtgc gtaacggcaa
      121 aagcaccgcc ggacatcagc gctatctctg ctctcactgc cgtaaaacat ggcaactgca
      181 gttcacttac accgcttctc aacccggtac gcaccagaaa atcattgata tggccatgaa
      241 tggcgttgga tgccgggcaa ccgcccgcat tatgggcgtt ggcctcaaca cgattttccg
      301 ccatttaaaa aactcaggcc gcagtcggta acctcgcgca tacagccggg cagtgacgtc
      361 atcgtctgcg cggaaatgga cgaacagtgg ggatacgtcg gggctaaatc gcgccagcgc
      421 tggctgtttt acgcgtatga caggctccgg aagacggttg ttgcgcacgt attcggtgaa
      481 cgcactatgg cgacgctggg gcgtcttatg agcctgctgt caccctttga cgtggtgata
      541 tggatgacgg atggctggcc gctgtatgaa tcccgcctga agggaaagct gcacgtaatc
      601 agcaagcgat atacgcagcg aattgagcgg cataacctga atctgaggca gcacctggca
      661 cggctggcac ggctgggacg gaagtcgctg tcgttctcaa aatcggtgga gctgcatgac
      721 aaagtcatcg ggcattatct gaacataaaa cactatcaat aagttggagt cattaccaaa
      781 gagcttatgg atgatgatta gagctcacga cccaagcatc accccgacca ccctcaacac
      841 actgatacaa ccccatatca cttacattct gaacggaatc ataaagagcc ataacctcct
      901 cataatcgcc atcaacatca tctaaccacg catcaaaatt agtagcagtc gccatgccaa
      961 tcctccattt tttagttttc aggagttaat ttacatagtg ataggggctg ttaagcaaat
     1021 aagtttttac cttttttgcc tcatgctcta aaagtgagca agacaggcat ttaccataac
     1081 gtcccattgt acgcaccgct aaaacggcct cagggcgttt ctgacgggaa accggtaaaa
     1141 caggcaacaa accacccgaa aacccgccag aaacgcgcag gctctgtttt tacggcatgc
     1201 atgagtatgc acgcaagtgc atagcgcgaa aattcacgcc attcagccag ggtaagtcct
     1261 gtttccggcg tacttcccat ccgaaaacgg tgaacgggga cgcaatttat tgcgtggccg
     1321 tgaagcgttg ccggcgcagc cggaaaaccg gttttcagca cgttcaggaa tccggttcgt
     1381 cgacggccgg caatcacgtt atggcaagtc accgaacgac tcaccacacg attcaccggc
     1441 gactcttcac tagagtcgta cccagagtcg ccacgcctaa aaaacaacca aacggggagt
     1501 cgggtctaga gtcgggtcgt tattaactca ttgtttttat agtcctgagt cgttaccgac
     1561 tctatgacga ctcgccgggg actctatgac gagtcgtcat agagtcggat ctatataaat
     1621 caaatttaaa aaacgaaatt ttacagactt aaactactga tattaaatac aaatccgcaa
     1681 aattttaatt ttgcgtagtg tgtggatatt tttagtggtg aggagcgttc agaaatccgg
     1741 cgattttttg gaaggttcag gaactccccg ggatggccgg agaggaaaac ggaagcatga
     1801 cggggtcagg attttttcca gaatttccac catggcgccg gggattcagt taattttgcc
     1861 tggtgatttt caagaaggag catggcctgt ttcaggctgt caatgtgcga atccttggac
     1921 aaaagtaaga tattcaggtg ttcaatctcc tgtttcagat gacgaatcac ctgttcactc
     1981 tggtcagcag aggctgtatc acgctgttcg gagacctgtc cagaatggtg ttcacccttc
     2041 ggttgctcaa agggaccaaa gacacgtaaa agctctgaag tatctaccat ttttgcattg
     2101 cgctcaccac tacaggtgga caggtcacct gttttaatta acctgtgcag tgttgttcta
     2161 ctcttacccg tcagtcgggc agcctcacta atagacactc tggccatcag ttaccatcct
     2221 gtaatgcatc cagtctcgag gacagtgtac ggaaaagatg ctccgcatca tcgtggagtt
     2281 cctcacaaag gtcggcctcg acatcgagat caagctcgtt aagcttctcc agcaggagca
     2341 gagactgatt ctggatgaat ttagccatgt tcagcgctgt tttctgttgt ttcgtcataa
     2401 gaggcctcag agcgtcagtg ctcaatgtag ggatgttctc ttttccgctt cctcgctcac
     2461 tcagtcgcta cgctcctgcc gttcggctgc ggcgagcggc aggagcatgc gtataaaagc
     2521 tcgagaaaac cgagcgatcg cgtgatgggg agaaggagag gccgcacagc ggccgttttt
     2581 ccataggctc cgccccccct gacaagcatc acagaaactg acgctcaaat cagtggtggc
     2641 gaaacccgac aggactataa agatatcagg cgtttccccc tgatggctcc ctcgtgcgct
     2701 ctcctgttcc gaccctgccg cttaccagat acctgtccgc ctttctccct tcgggaagcg
     2761 tggcgctttc tcatagctca cgctgttggt atctcagttc ggtgtaggtc gttcgctcca
     2821 agctgggctg tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta tccggtaact
     2881 atcgtcttga gtccaacccg gtaagacacg actaatcgcc attgacaacg gccactggta
     2941 gacaggatgt gcgagagatg tatcgagagt tcttgaagtg gtggcctgac tgcggctaca
     3001 ctgaaaggac agatttggtg acatgtctcg cacaagactg ttaccacggt tcagaagttc
     3061 cccaacttac tgaaccttcg aaaaaccacc tccccaggtg gttttttcgt tttccgagaa
     3121 agagattacg ctttgagcga atgaatctca agaagatcat ggcatttgat gaacaaatgg
     3181 gtaatgactc caacttattg atagtgtttt atgttcagat aatgcccgat gactttgtca
     3241 tgcagctcca ccgattttga gaacgacagc gacttccgtc ccagccgtgc cagccgtgcc
     3301 aggtgctgcc tcagattcag gttatgccgc tcaattcgct gcgtatatcg cttgctgatt
     3361 acgtgcagct ttcccttcag gcgggattca tacagcggcc agccatccgt catccatatc
     3421 accacgtcaa agggtgacag caggctcata agacgcccca gcgtcgccat agtgcgttca
     3481 ccgaatacgt gcgcaacaac cgtcttccgg agcctgtcat acgcgtaaaa cagccagcgc
     3541 tggcgcgatt tagccccgac gtatccccac tgttcgtcca tttccgcgca gacgatgacg
     3601 tcactgcccg gctgtatgcg cgaggttacc gactgcggcc tgagtttttt aaatggcgga
     3661 aaatcgtgtt gaggccaacg cccataatgc gggcggttgc ccggcatcca acgccattca
     3721 tggccatatc aatgattttc tggtgcgtac cgggttgaga agcggtgtaa gtgaactgca
     3781 gttgccatgt tttacggcag tgagagcaga gatagcgctg atgtccggcg gtgcttttgc
     3841 cgttacgcac caccccgtca gtagctgaac aggagggaca gctgatagaa acagaagcca
     3901 ctggagcacc tcaaaaacac catcatacac taaatcagta agttggcagc atcaccgaag
     3961 atcctgaaga tcctgaaggt cattattgat agcaaacttt acctcttcaa agctcgcgtc
     4021 aatcattaga acctcattca caccccgtaa aaatattttt gttttttcgt taccatatga
     4081 ttttattagg ataatatcat ctttttttag catgatactt tcgttactta ttgttttgag
     4141 atgaagcatc gtcatggttt tttttgcatg tgcttgttaa ggggattgag attattccta
     4201 aatccttgag tttgtacata caaaaaaa
//
