LOCUS       CP017619                2097 bp    DNA     circular BCT 28-NOV-2016
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium strain 22495
            plasmid unnamed2, complete sequence.
ACCESSION   CP017619
VERSION     CP017619.1
DBLINK      BioProject: PRJNA344760
            BioSample: SAMN05832834
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium (Salmonella
            typhimurium)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ogunremi,D., Blais,B., Huang,H., Wang,L., Elmufti,M., Allain,R.,
            Hazelwood,J., Grenier,C., Amoako,K., Savic,M. and Fattahi-Ghazi,N.
  TITLE     Genome sequences of two strains of Salmonella enterica serovar
            Typhimurium displaying different virulence in an experimental
            chicken model
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Ogunremi,D., Blais,B., Huang,H., Wang,L., Elmufti,M., Allain,R.,
            Hazelwood,J., Grenier,C., Amoako,K., Savic,M. and Fattahi-Ghazi,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2016) Canadian Food Inspection Agency, 3851
            Fallowfield Road, Ottawa, Ontario K2H 8P9, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Newbler assembler software v. version 2.6; CLC
            Genomics Workbench v. version 7
            Genome Coverage                   :: missing
            Sequencing Technology             :: 454; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/07/2016 13:06:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 3.3
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,802
            CDS (total)                       :: 4,696
            Genes (coding)                    :: 4,425
            CDS (coding)                      :: 4,425
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 271
            Pseudo Genes (ambiguous residues) :: 0 of 271
            Pseudo Genes (frameshifted)       :: 211 of 271
            Pseudo Genes (incomplete)         :: 45 of 271
            Pseudo Genes (internal stop)      :: 32 of 271
            Pseudo Genes (multiple problems)  :: 15 of 271
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            Source DNA is available from Dr. Dele Ogunremi, Ottawa Laboratory
            Fallowfield Canadian Food Inspection Agency, Ottawa, Canada.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium"
                     /mol_type="genomic DNA"
                     /strain="22495"
                     /serovar="Typhimurium"
                     /host="gull"
                     /sub_species="enterica"
                     /db_xref="taxon:90371"
                     /plasmid="unnamed2"
                     /geo_loc_name="Canada"
                     /collection_date="2007"
                     /note="small plasmid"
     gene            88..1077
                     /locus_tag="BKC11_24010"
     CDS             88..1077
                     /locus_tag="BKC11_24010"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Replication protein"
                     /protein_id="APF12266.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="Replication protein"
     Typing          1080..1161
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(804..995)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
       61 gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg atctccagaa cctcacggac
      121 tattccccct cagatgcgcc ctgggacgct cacagaagcg tttctgatga cgtgggaggg
      181 atttacctgc ttgcagccga atatgagcgc tacggggcgc gtatggccct ctgtggtggt
      241 ttactgcgtt tcgggtggtc taccctcaag gaaaccggag aaacgcgtct gaggctgcgt
      301 gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc agtggaggcg ctccctgatg
      361 tggcaagccc gtttctacca gtccctgccg cgtatcgtgg cggattatcc cgatgcccgc
      421 tggatgttcc tgactctgac cgtgcgcaac tgtgcgatcg gggagctggg cgagatgctg
      481 aaccggatga atgcagcttt tcagcgcatg aaggttcgca aggagttccg gcctgtgcag
      541 ggctggatac gtaccacgga agtcacccgc gggagcgacg gcagcgcaca cccgcacttc
      601 cacaccctga tgatggtgcc gcctggcatg ctaaatggga aaagttacgt caggcatgaa
      661 cgctgggttg aactctggcg ggagtgtctg cgggtcgatt atgacccgaa tgttgatgtc
      721 cgggcagtga aacctcgtaa gccgaagggc ggcgaatcgc tggcctgcgc gaccgccgaa
      781 ctggtgcgcg gtgcggtggc cgaaaccctg aaatattcca cgaagccggc tgacatggtg
      841 gccgatcctg aatggttcct cgaactgacc cgccagacgc acaagcgccg ctttgtggcg
      901 accggcggcg cactcaaaga cgtgctgaaa ctcgatcagg aaactgacgc cgacatggtg
      961 atcggtgatg atatttccga gggcgacgat gacggttcac gaatcgcgtt cgagtggaaa
     1021 accgaggtca gaaagtaccg tcgctcaccg acgaaagata aaactgaatc aggctagcgg
     1081 ggtgtcgggg tgcacccctg accagatggc aattgtgata gcgtcgcgtg tgacggtatt
     1141 acaattacac atcctgtccc gaaaattccc gccgtttctc ggttttttga gcgtcgcaga
     1201 ccgcacgaca aacgaaccta aggtgagttt gtataagtgc gcacttcgtg agattccctg
     1261 actgccagtt tgtcgattgc gcggaacggc tgcggcacga aaacggcaaa atgatttact
     1321 cgccgtttgt gtgggttgtt ttgtggggtg tcaatggggt tgtggtcttt tttgtgggtt
     1381 aaagtgtggg tgattgtgtg ggctgtgtgt tttgagttgt gggtgattat gtgggtcatt
     1441 gtgtgggctg tatgcacggc attttttttg ttctcctaaa acacaggcac gataagcggc
     1501 gtacacaaaa cggggcgttt cgctccgtcg cttgtgccaa aggggacacc cctttgcaac
     1561 cctgtgcggt tctacgaacc tggtcaggac tgcgccccga caccccgcca acgcctcacg
     1621 gaacgcgaaa aaattccgcg taccgttcac cgttccctga ttcgtcaaac agaaaatcgc
     1681 gggggcccgc gcctccggcg tgggttccga ttttgtgatt gacgacggca cgggaaaaac
     1741 actggggatg gtggttggtg tcacgcagtg aggccaacca cctgcaagac ggtttttttt
     1801 gttgttcaca aaatcggggt gaaagtctgt ggatgagatg gatgtaagtg ggtggggttg
     1861 ggtgttttgg gtgactgaaa atcccgctca aaattcaagc gaatctcgcg cgcgatcctt
     1921 gtatttatac ttaagggata actctaggat ttaaattcgc ctccagccct tgtgccgcaa
     1981 ggcctgaagg gggatttgtc ggaaaatggt tttggagtta ttctgtcggg agtggtcgca
     2041 ttaaaagcga cccccgcaac gagggcaatc gttcgggggt gtgaccacct gtaggaa
//
