LOCUS       CP014656                5511 bp    DNA     circular BCT 08-MAR-2016
DEFINITION  Acinetobacter sp. DUT-2 plasmid unnamed5, complete sequence.
ACCESSION   CP014656
VERSION     CP014656.1
DBLINK      BioProject: PRJNA313514
            BioSample: SAMN04525297
KEYWORDS    .
SOURCE      Acinetobacter sp. DUT-2
  ORGANISM  Acinetobacter sp. DUT-2
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5511)
  AUTHORS   Zhou,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2016) Food and Environment, Dalian University of
            Technology, Dagong Road No. 2, Panjin 124221, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2016
            Assembly Method                   :: Falcon v. 0.3.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/07/2016 11:32:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision      :: 3.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 3,842
            CDS (total)                       :: 3,746
            Genes (coding)                    :: 3,374
            CDS (coding)                      :: 3,374
            Genes (RNA)                       :: 96
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 372
            Pseudo Genes (ambiguous residues) :: 0 of 372
            Pseudo Genes (frameshifted)       :: 336 of 372
            Pseudo Genes (incomplete)         :: 36 of 372
            Pseudo Genes (internal stop)      :: 22 of 372
            Pseudo Genes (multiple problems)  :: 22 of 372
            ##Genome-Annotation-Data-END##
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria available from Hao Zhou, Dalian University of Technology,
            China.
            This genome has a base modification file available.
FEATURES             Location/Qualifiers
     source          1..5511
                     /organism="Acinetobacter sp. DUT-2"
                     /mol_type="genomic DNA"
                     /strain="DUT-2"
                     /isolation_source="marine sediments"
                     /db_xref="taxon:1809055"
                     /plasmid="unnamed5"
                     /geo_loc_name="China: Panjin, Liaodong Bay"
                     /collection_date="20-Dec-2015"
                     /collected_by="Haixia Pan"
     gene            108..1115
                     /locus_tag="A0J50_19185"
     CDS             108..1115
                     /locus_tag="A0J50_19185"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_018308712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopB"
                     /protein_id="AMO42639.1"
                     /translation="MTLTRYSTQILVLTLASASMSAALAQAHEGHAAPAASSASQPAMT
                     TMDSMDSMDGSTASPAMPMDHGAMNHAGMNHGGMDMGGMDMGSSSTAPADARDPHGYSN
                     GYTLNTGPYAQKDTSALMMSDMHSFGSFLVDRLERVHTRSGNSVAYDTQGWVGNSYDKF
                     YLKAEGDIEQGRVGDARTELLWSHAITPYWDTQLGLRVDVGSNRPGRNWLAFGVQGLAP
                     YWFEVEATGYVGEQGRTALRLAAEYEVLLTQRWVLQPRVEANLYGKEDPELGIGRGLSS
                     AAYGVRLRYEFTRQFAPYVGIERNQSFGRTASFVRGAGGNAGETRLVAGVRVLF"
                     /name="copper resistance protein CopB"
     gene            1162..1548
                     /locus_tag="A0J50_19190"
     CDS             1162..1548
                     /locus_tag="A0J50_19190"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_008652096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="AMO42640.1"
                     /translation="MSYQSLFAKTAVTIAAAAFATAAFAHPKLLGSTPEDNSTVSAPEK
                     IELHFSENLSKQFSGASLLMTSMPGMNHASPMKMAAKVSGSDDPKTMVITPSQPLMPGV
                     YSIEWRAVSSDTHPITGKITFTVK"
                     /name="copper resistance protein CopC"
     gene            1556..2479
                     /locus_tag="A0J50_19195"
     CDS             1556..2479
                     /locus_tag="A0J50_19195"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_016835270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="AMO42641.1"
                     /translation="MDGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVL
                     LTASAAAIGLVLSAVSMLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLL
                     VVIMAALLSNVWPTVSAVLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAA
                     GGWIGALAAFILMLVLRYGNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVG
                     PTVTGLFSSPYGQLLIAKLGLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRS
                     LFVETCCAFLILALVAWLGTLGPMTE"
                     /name="copper resistance protein CopD"
     gene            2551..2967
                     /locus_tag="A0J50_19200"
     CDS             2551..2967
                     /locus_tag="A0J50_19200"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_011633184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="AMO42642.1"
                     /translation="MKKFFLASLLALTSVAAHAAGEAITVYKDPDCGCCTAWAEHMNQA
                     GYRLHVMDSKEMPAIKKRLGVPEALQSCHTAVVEGTGQVIEGHVPAPAVAKLIASRSAK
                     GVAVPGMPLNSPGMGKMDGKLVTVDFAGKEFSRN"
                     /name="CopG family transcriptional regulator"
     gene            3122..3538
                     /locus_tag="A0J50_19205"
     CDS             3122..3538
                     /locus_tag="A0J50_19205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AMO42643.1"
                     /translation="MKRFTHLIGAVAMATFSVATPAQNAAEHEGHHPEAAATASPAKSA
                     AAGAPMVQMDSQIKAMREMHQKMMSAASLEERRQLMADHMKTMKDSMTMMQGMMATRAE
                     HKSAPTPAMMQKQMDMMQMTMQMMMDCMEMPTSK"
                     /name="hypothetical protein"
     gene            3619..5511
                     /locus_tag="A0J50_19210"
                     /pseudo=""
     CDS             3619..5511
                     /locus_tag="A0J50_19210"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_011871055.1"
                     /note="incomplete; partial on complete genome; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="copper-transporting ATPase"
                     /name="copper-transporting ATPase"
ORIGIN
        1 taggccgttg ggcctggcat tgccacctca tgtatcacat ggatatgggc atgttccgtg
       61 aagtcgtcgt cagctaacca ggacctgcac cgaaaggcac acctagaatg actcttaccc
      121 gctattcaac tcagattctc gtgctgaccc ttgcctcggc aagcatgagc gcagcattgg
      181 cccaggctca cgaaggtcat gccgcgcctg cagctagctc agcctcgcag ccagcaatga
      241 ccaccatgga cagcatggat tccatggacg ggagcaccgc cagtcccgcg atgccaatgg
      301 atcatggggc aatgaatcac gccggcatga accacggtgg aatggacatg gggggcatgg
      361 atatgggctc cagttcgacg gcgcctgcgg atgcacgaga cccccatggc tattccaatg
      421 gctacacgct caataccggc ccgtatgccc agaaggacac cagcgcattg atgatgtccg
      481 atatgcattc cttcggttcc ttcctggtgg atcgcctgga gcgcgttcat acccgcagtg
      541 ggaactctgt cgcctacgat acccaaggct gggtcggtaa ttcgtatgac aagttctacc
      601 tcaaagccga aggcgatatc gaacaaggcc gcgtaggcga tgctcgaacc gaattgctgt
      661 ggagccatgc gattactccc tattgggaca cccagctcgg ccttcgcgtc gacgtcggca
      721 gcaatcgacc tggtcgcaat tggctcgcct ttggcgtaca gggactggcc ccatactggt
      781 ttgaagtaga ggcgactggc tacgttggag agcaaggtcg gactgccttg cgcctggcgg
      841 ccgaatacga ggtgttgttg acccagcgtt gggtgcttca acctcgcgtc gaggccaacc
      901 tgtacggcaa agaagatcca gagcttggta tcgggcgcgg gctgtccagc gctgcctatg
      961 gcgttcgact gcgctatgag ttcacccgcc agttcgcccc ttacgtcggg atcgagcgca
     1021 accagagttt cggccgtact gccagcttcg tacgtggtgc cggcggcaat gccggtgaaa
     1081 ccaggctcgt ggccggtgta cgcgttttgt tctaagtctc caccttttta accctccaca
     1141 acatctccaa ggagtatcgc catgtcctac cagtccctct tcgctaaaac agccgtcacc
     1201 atcgctgcag ccgcgttcgc taccgcagca ttcgctcacc cgaagctgct tggctcgacc
     1261 cctgaagaca actcgacagt gagtgcgccg gaaaagatcg aactgcactt ctcggaaaat
     1321 ctctccaagc agttctccgg tgccagcctt ttgatgacca gcatgccagg gatgaaccat
     1381 gcctcgccaa tgaagatggc ggctaaagtg tcgggttcgg atgatcccaa gaccatggta
     1441 atcaccccga gccaaccgtt gatgcccggc gtgtacagca tcgaatggcg tgcggtctcg
     1501 tcggataccc atccgatcac cggcaagatt acgttcacgg tgaagtgagc aagtaatgga
     1561 cgggatgacc gttttggtgc gctttgcgct gtatttggac ttgatgcttg tctttggcct
     1621 gccgctgttc cagctgcatg cgctgcgctg gcctgagcgt tcatccccct tgggtaagaa
     1681 gttcgtcctg ctgacagcca gcgcagccgc aattggccta gtgctgtcgg cggtgagcat
     1741 gctgctcatg gccaaggcga tgactggcgc tgctgacatc ggctcgattg agcagcacat
     1801 gttcgagatg atgttgacgg acacctcctt tggcatagcg tggtgcctgc ggatggggat
     1861 gttgctcgtg gttatcatgg ctgcgctact gtcgaacgta tggccgaccg tgagcgcagt
     1921 tctgatgagc gcagcggggg ccaccgcctt ggccacgcta tcctgggctg gtcatggtgc
     1981 catggacgaa ggcgtccgag gacaggttca cctgattgcc gacatcattc atctgctcgc
     2041 cgctggcggc tggataggtg cgctggcagc gttcatcctg atgttggttc tgcgttacgg
     2101 caacgacccg gcagatgttt ctctactcag ccgaacgctc aatggctttg cgctgatggg
     2161 cacactcatc gtcggatcgt tggtgatcac cggtgcactg aactactggc tgattgttgg
     2221 ccccactgtc acagggcttt tctcttctcc ttacgggcaa ctactaatcg ccaagctcgg
     2281 cctgttcggc ttgatgctgg ctctggcggc cgcaaatcgc taccgcttga gcccgttgtt
     2341 ggaacgagtc cacgtttcgg gagaacacgc cacggcgatt gctgctctac gcagaagcct
     2401 tttcgtcgaa acctgctgtg ctttcctgat tctggcgctg gtcgcctggc tcggtacctt
     2461 ggggccaatg actgaataaa ttcaatccca aggaggacag agagttgcag gctggaggat
     2521 cgttgcccct tatcgtaaaa ggaaaaaaag atgaaaaagt tcttcctggc gagcctgctc
     2581 gcgctgactt ctgttgctgc gcacgcggcc ggagaagcca tcaccgtgta caaagaccca
     2641 gactgcggct gctgcacggc ttgggcagaa cacatgaacc aggccggcta ccggctccat
     2701 gtcatggaca gcaaagagat gcctgcgatc aaaaagcgtc ttggcgtacc tgaagctctt
     2761 cagtcctgcc ataccgccgt tgtagaaggg acgggccagg tgatcgaagg ccatgttccg
     2821 gccccagctg tggccaaact catcgcttcc cgatcggcaa aaggtgttgc ggtaccaggt
     2881 atgcccctca actcacccgg gatgggaaag atggacggga agttggtcac agtagacttt
     2941 gccggcaagg aattctcgcg aaattaatcg ctaccgtgct ccagggtaca tttcgtccgg
     3001 ggcaggcttc cgagcgtttt cacatagctt tgacttgcat cacttgcagt ctttctatgc
     3061 tcactagact tcatatagag gctgctgatc tgcatgcctc ctaatgaatc gaggtgaaat
     3121 catgaaacgc ttcacccacc tgatcggcgc ggtcgcgatg gcaacatttt cggttgctac
     3181 accggctcaa aacgcagctg agcacgaagg acatcatccc gaggcggctg caactgcttc
     3241 tcccgcgaaa tctgcggcag caggtgcacc catggtgcag atggatagcc agataaaagc
     3301 catgcgcgag atgcatcaaa agatgatgag cgccgcttct cttgaggaac gccgccaatt
     3361 gatggcggat cacatgaaga cgatgaaaga cagtatgacc atgatgcaag gcatgatggc
     3421 gaccagggcg gagcataaat cggcaccaac ccctgcgatg atgcagaagc aaatggacat
     3481 gatgcagatg accatgcaga tgatgatgga ctgtatggaa atgccaacgt cgaagtaagc
     3541 cgctggcgac gtgaggacgc gcttcatttg cccctcacgt tacctgctgg atatacctga
     3601 cacgggagag cagtaactat ggatgaacac caccatcatc acgccgcacc agttccagcc
     3661 gttgaagcgg gatctccccc ggaaaacagc cagactgatc cggtttgcca catgaaggtg
     3721 gctcccgatc cctaccggag gattgaacac ggcgggagag acttttactt ctgcagtgac
     3781 aagtgcatgg ggaagtttcg tacaaatccg cccgcatatg tcggagattc atcaaagccc
     3841 gaggcaagca cggtatcgtc tgacggaact gtctatacat gccccatgca cccgcaagtc
     3901 aggcagccat cgccgggaaa ttgccccatc tgtgggatga gcctggagcc gctgctacca
     3961 ttggaccaag aagaggagaa ccctgagctg cgggacttcc aaaggcgatt ctggctgacg
     4021 ttacccttga cggtgcttgt cacggtgctg gccatggccg gcagccgcct atttccacat
     4081 ggcctgaccg gtcaaagctg gatcgagctc gcgctcggta cacccgtggt cctctatgcc
     4141 ggatggccgt tcttgacccg cggtgtggac tcgatcgtcc accgcagtcc caatatgtgg
     4201 accctgatca gctcgggctt ggtagccgcc tatggctata gtgtggtcgc aactgtcttc
     4261 cccgaactgt tccccaaggc cttcatggaa cacgggcgga ttggtgtcta cttcgaagcc
     4321 gcagccgtca tcatctcact gacgctgcta ggacagattc tggaactgcg ggcacgctcg
     4381 cagacctctg ccgccatcaa atcactgctc ggcttggcac ctaaaacagc tagacggatc
     4441 gctgcagatg gcacggaaga agatatcccc ttgagcaacg ttcatattgg cgacctacta
     4501 agggtccgtc ctggtgaaaa agtcgctact gacggggtgg tcgtggaggg agagagcgcc
     4561 attgacgagt cgatgttgac tggcgaaccg gtccccgtta ccaagcgacc aggtgacaag
     4621 gttatcgggg caacgatcaa tgccagcgga agcctgatca tccgctccga gaaggtcgga
     4681 tcgcagacca tgctttcgca gatcgttcag atggttgccc aagcccagcg ctcgcgcgcc
     4741 cccatgcagc ggttggccga cgttgttgcc ggctacttcg tcgtgatcgt ggtcggcatt
     4801 gctgtgctta cgctgcttag ctggggattc tttgggccac aacccagctg ggtctatggc
     4861 tttgtcaacg cggttgcggt gctgattatc gcttgcccgt gcgcgcttgg cctggccaca
     4921 cccatgtcca tcatggccgc cactggccgg gccgcaaccc aaggcattct gttccgagac
     4981 gcagcggcca ttgagagcat gaagaagctc gatacgctca tcgtcgacaa gaccggcacg
     5041 ctcacggaag gaaagccagc atttgaccgc ataatcgccg caccgggcag tcaagagacg
     5101 gaggtgttgc agctggcggc aagcctcgat cagggaagtg agcatccact agcgcacgct
     5161 atcgttgccg aggcacgccg acgccagctt tccttgatga cacccagtag ctttgaatct
     5221 tccagtggaa taggtgttcg aggcgtagtc aacggggcgc gggtagcgtt gggcaatacc
     5281 acgctgatgg aggcagaagg ggtctcttac gaagctctgt tgtcggaagc cgaaactctg
     5341 cgcgccgaag gtgccagcgt tatgtatctg gcgagaagcg gcgtgctttt ggggctgcta
     5401 gcggtctctg atcccgtgaa ggaaactaca cgcgaggcgc tggccagtct gaaagaagct
     5461 gggctgacgg tggtcatggc caccggtgat ggcacaacca cggcgaaagc a
//
