LOCUS       CP011625                1919 bp    DNA     circular BCT 09-JUN-2015
DEFINITION  Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-1919, complete
            sequence.
ACCESSION   CP011625
VERSION     CP011625.1
DBLINK      BioProject: PRJNA246471
            BioSample: SAMN03733738
KEYWORDS    .
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Sheppard,A.E., Stoesser,N., Wilson,D., Sebra,R., Kasarskis,A.,
            Anson,L., Giess,A., Pankhurst,L., Vaughan,A., Grim,C.J., Cox,H.,
            Yeh,A., Sifri,C.D., Walker,S., Peto,T.E., Crook,D.W. and
            Mathers,A.J.
  TITLE     Rapid spread of a carbapenem resistance gene driven by multiple
            levels of genetic mobility
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Sheppard,A.E., Stoesser,N., Wilson,D., Sebra,R., Kasarskis,A.,
            Anson,L., Giess,A., Pankhurst,L., Vaughan,A., Grim,C.J., Cox,H.,
            Yeh,A., Sifri,C.D., Walker,S., Peto,T.E., Crook,D.W. and
            Mathers,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2015) University of Oxford, John Radcliffe
            Hospital, Oxford OX39DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: HGAP3 v. 2.2.0
            Genome Coverage              :: 57X
            Sequencing Technology        :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 06/03/2015 10:35:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            Annotation Method :: Best-placed reference protein set; GeneMarkS+
            Annotation Software revision :: 2.10
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes                        :: 6,915
            CDS                          :: 6,622
            Pseudo Genes                 :: 175
            rRNAs                        :: 25 (5S, 16S, 23S)
            tRNAs                        :: 86
            ncRNA                        :: 7
            Frameshifted Genes           :: 42
            ##Genome-Annotation-Data-END##
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /strain="CAV1374"
                     /isolation_source="Perirectal"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="pCAV1374-1919"
                     /geo_loc_name="USA:Virginia"
                     /lat_lon="38.14 N 78.45 W"
                     /collection_date="2010-08"
                     /collected_by="Clinical Microbiology University of Virginia
                     Health System"
     gene            124..306
                     /locus_tag="AB185_00005"
     CDS             124..306
                     /locus_tag="AB185_00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AKL32368.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            complement(1240..1356)
                     /locus_tag="AB185_00010"
     CDS             complement(1240..1356)
                     /locus_tag="AB185_00010"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_001557753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication initiation protein"
                     /protein_id="AKL32369.1"
                     /translation="MLARMRVSVKCFMWQEKKGGTGASAEYVIQDIFRFLAH"
                     /name="plasmid replication initiation protein"
     gene            1581..1817
                     /locus_tag="AB185_00015"
     CDS             1581..1817
                     /locus_tag="AB185_00015"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AKL32370.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          1244..1417
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.857"
                     /coverage="100.0"
                     /evalue="5.54e-83"
     Typing          complement(756..1277)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.308"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ttctcgatat gggcacagaa aggtgtatgt ttcaggccgg aggcctcaga aacgcgctga
       61 gggcgtttga ggcggtgcgg ccaacggatg ttatgtttaa tgttgataac aggagtaaga
      121 gtgatgctta catttattgg tgtagtggta gtcgccgtta ttgcatttaa attatttatg
      181 ctttttttta gttcatccga atctgccgtc gaacgtgcta cccgtaaata tatggagaac
      241 cctacgagtg ctaactataa aataatggtg gctacacgca tgagaaatga gaagaaaaga
      301 gggtgatata tgtttgagtt tattggtttt ttatttttgc ttttggtgtg ttatgtcttt
      361 atacaaatgg ttgctgtcag ggtgtttcct gaatatggag tacggaaagc ggaggaacga
      421 taccgtcgaa atccatcagc agaaaatgag gatctgttat ggagagctag aagtcgtata
      481 actaaacgca agtaatgttt cctaagtgtg ttgataggca aacatggtgg gggttactac
      541 tctcggagtt aatgatcttc ttgtgatcct gtcgtttcag tcgtaatctc ttgctctgaa
      601 aacgaaaaaa ccacctgggg aggtggtttg atcgaaggtt aagtcagttg gggaactgct
      661 taaccaggta actgggtata cgagaccgca gataccgaaa ctgttctttc agtgtagccg
      721 cagtcaggcc catacttcaa gacctctgaa tctctctctc gtatatccca gttaccagtg
      781 gctgctgcca gtggcgcttt gtcgtgcttt ctcgggttgg actcaagatg atagttaccg
      841 ggtaaggcgc agcagtcgga ctgaacgggg ggtttgtgca tacagtccag cttggagcga
      901 actgcctacc cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg
      961 aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc cgccaggggg
     1021 aaacgcctgg tatctttata gtcctgtcgg gtttcgccac cactgatttg agcgtcaggt
     1081 ttcgtgatgc ttgtcagggg ggcggagcct atggaaaaac ggcttcgccg cggccctatc
     1141 gcttccctgt taagtctctt cctggcatcc tccaggaaat ctccgccccg ttcgtaagcc
     1201 atttccgctc gccgcagtcg aacgaccgag cgtagcgagt cagtgagcga ggaagcggaa
     1261 tatatcctgt atcacatatt ctgctgacgc gccggtgccg ccttttttct cctgccacat
     1321 gaagcacttc actgacaccc tcatccgtgc caacatagta agccagtata cactccgcta
     1381 gcgctgcgtg actggttcag ggctgcgccc cgaaacccgc taaaaccact gccgcgcctg
     1441 cggcttgccc aacgtctcac gtcaccggat taaaatccgc tcccgttcac cgtttctggc
     1501 tgtctttcag caccgccagc gcttcatcgg ttctgctgtg tctggcagac tgtgcggagt
     1561 tattctgacg ggagaatgct atgaacagac tgacaaacct gacacctgca gagaaaaaat
     1621 ttcttgatga tgctattgcc gcagctgaga gagcgtcagg caaaaagcta aatcagccga
     1681 accggcatat cgtcctgaac agagcgcgtg cgcagattga gtcgcagcgt tacgccgacc
     1741 gccagcgtgc attacgtgag gatgagcggc agcagtccga gtttgcctgg tcacgtccgc
     1801 gcgcgccgcg ccgctgattg cgccttttgg cggtttagtg gtgctgacac tccgaaatcg
     1861 tctgccattc acccgcgtgc atagccatgc aggtacgcag aaatcatcag gggcgtttt
//
