LOCUS       CP004060                4675 bp    DNA     circular BCT 03-SEP-2015
DEFINITION  Salmonella enterica subsp. enterica serovar Typhimurium str. U288
            plasmid pSTU288-3, complete sequence.
ACCESSION   CP004060
VERSION     CP004060.1
DBLINK      BioProject: PRJNA157919
            BioSample: SAMN02604233
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. U288
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. U288
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4675)
  AUTHORS   Hooton,S.P., Timms,A.R., Cummings,N.J., Moreton,J., Wilson,R. and
            Connerton,I.F.
  TITLE     The complete plasmid sequences of Salmonella enterica serovar
            Typhimurium U288
  JOURNAL   Plasmid 76, 32-39 (2014)
   PUBMED   25175817
REFERENCE   2  (bases 1 to 4675)
  AUTHORS   Hooton,S.P.T., Timms,A.R., Roswell,J., Wilson,R. and Connerton,I.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2013) School of Biosciences, Division of Food
            Sciences, University of Nottingham, Sutton Bonington Campus, Sutton
            Bonington Near Loughborough, Leicestershire LE12 5RD, United Kingdom
COMMENT     Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            The source DNA is available from our laboratory (University of
            Nottingham, School of Biosciences, Division of Food Sciences, Food
            Microbiology Department, Sutton Bonington Campus, Leicestershire
            LE12 5RD) and enquiries should be made to Prof. Ian Connerton at
            ian.connerton@nottingham.ac.uk.
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. U288"
                     /mol_type="genomic DNA"
                     /strain="U288"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /db_xref="taxon:1171376"
                     /plasmid="pSTU288-3"
     gene            991..1314
                     /locus_tag="STU288_3p00005"
     CDS             991..1314
                     /locus_tag="STU288_3p00005"
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MobC"
                     /protein_id="AGK12412.1"
                     /translation="MLTMWVTEGEHRRLLERCDGRQLAAWMRQTCLDEKPARSGKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="mobilization protein MobC"
     gene            1304..2803
                     /locus_tag="STU288_3p00010"
     CDS             1304..2803
                     /locus_tag="STU288_3p00010"
                     /codon_start=1
                     /transl_table=11
                     /product="MobA-like protein"
                     /protein_id="AGK12413.1"
                     /translation="MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELID
                     ASPYVKKYTSGVLSFAEADLPSGQREKLMASFERVLMPGLDKDQYSILWVEHSDKGRLE
                     LNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSAL
                     PKAKQEAAEAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRN
                     IRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREICKSGTERKREENQRRH
                     PRPRPETVLSHEPAHERHGAHGQPDVADHRPGLRAADRLERGHSVVAGAADTRQLHDHP
                     GAEEHAGHAVREEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKT
                     VAERIRAATAGLLEKAGRVGERLRGMADDVWSYATGERSAERARHGLEQAGAEFERAAA
                     PVVERLNAVELHREQERVVQHQKALELERSQRQRTYNSPSL"
                     /name="MobA-like protein"
     gene            1992..2477
                     /locus_tag="STU288_3p00015"
     CDS             1992..2477
                     /locus_tag="STU288_3p00015"
                     /codon_start=1
                     /transl_table=11
                     /product="MobB-like protein"
                     /protein_id="AGK12414.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQNTGEMLKAAFSEHEKSVKAELNESA
                     KRISAAILDHDRKLSSAMSQRTKGMVRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVKVNPEAGRFGEDSSWMILAGK"
                     /name="MobB-like protein"
     gene            2481..2696
                     /locus_tag="STU288_3p00020"
     CDS             2481..2696
                     /locus_tag="STU288_3p00020"
                     /codon_start=1
                     /transl_table=11
                     /product="MobD-like protein"
                     /protein_id="AGK12415.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSSD"
                     /name="MobD-like protein"
     gene            3027..4535
                     /locus_tag="STU288_3p00025"
     CDS             3027..4535
                     /locus_tag="STU288_3p00025"
                     /note="COG2199 FOG: GGDEF domain"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AGK12416.1"
                     /translation="MECIFMRIKKPHLRPIVITLSVGGILLTSIFLIAVIMVFQRENIE
                     KDLLYANSSYAMKMSDVMSGYIEMAQGELAYGAKKIKLTNDIDSLKDEADRLRLQSGMF
                     NSVLVVSNDAVVLATSPESLDLVGTRLNSSASKLAIEEKKPFISSPLKSVTGNLIILLS
                     HPIYDKGGNYIGYVGGSIYLKKHSLFGDVLSRHFFKNNTEISIVSDDGNVIFNNDKSAV
                     DRPMVMSDDLKSKLTASDRGEGAFFSSGHRYLLGYASMKNTTWNVLVYSRADSVTTILI
                     AYAKSVLVLLIIIIIVFSLISYFIASSISLPLEKLAISTNAKDIGASLVYIKAINAWYA
                     EADRLKKALFTYIKVMMERVDYLNEVALKDPLTGVNNRLGFLSKIQNHKRDSGYSVIVI
                     DVDFFKEINDSFGHGVGDEVLVSLAHIINSCCRSEDVVCRFGGEEFVVFLPNTSVVTAK
                     CVAERIRSVIESTVFPNNLRVTISAGVATQDDPLGRIDFLLKNA"
                     /name="hypothetical protein"
     Typing          706..878
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.276"
                     /coverage="100.0"
                     /evalue="9.21e-81"
     Typing          complement(230..781)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.639"
                     /coverage="91.0"
                     /evalue="0.0"
     Typing          992..1308
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="1.9499999999999998e-60"
     Typing          1305..2800
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.982"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gatcctcttg ttatcccttc gatgtcgtcg taatctcata ccctgtaaac aaaaaaacca
       61 ccgctaccaa cggtggttcg tttgccggaa ttcagagcta ccaactcttt cttccgaagg
      121 taactggctt tcacggagcg caggtaccaa aactgtcctt ccagtgtagc cgcagtcagg
      181 ccaccacttc aaggactctg tagaacactc tactactccg ctccgtgaat cctcttacta
      241 atggctaccg ccactggcga tttttcgtgt ctgttccggg ttggactcaa gatgatagtt
      301 accgggacaa cgtggtagtc gggctgaacg gggggttcgt gcatacagtc cagcttggag
      361 cgaactgcct tcccggaacc gagtgtcagg cgtggaatga gataaacgcg gccataacag
      421 cggattgaca tcggtaaacc gaaaggcagg aacaggagag cgcacgaggg agccaccagg
      481 gggaaacgcc tggtatcttt aagtcctgtc gggtttcgcc accactgatt tgagcgtcag
      541 atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa acggcttcgc cgtggcctta
      601 tcgcttccct gttaagcttc ttcctggcat ctcccaggaa atttccgccc cgcctgtaag
      661 tcggtaccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
      721 aatatatcct gtatcacata ttctgctgac gctccgctgc tgcatttttc tcctgccaca
      781 tgaagcactt cactgacact cgcatccgtg ccaacatagt aagccagtat acactccgct
      841 agcgctacgt gactggttca gggctgcgcc ccgaaacccg ccaaaagcct gacgcgcctg
      901 cggcttgtcc aaccccgcgc cgaccgggaa agcctttccc gcccgtcccg gcgttatcag
      961 gaggccggtt tgtcagagaa acggaacaag atgctcacca tgtgggtgac ggagggcgag
     1021 caccggcggc tgcttgagcg ctgtgacggc aggcagctgg cggcgtggat gcggcagacc
     1081 tgcctggacg aaaagccggc acgttccgga aagcttccct caatctcgcc ggcgctgctg
     1141 cgccagcttg ccggcatggg caataacctg aaccagatag cccgccgtgt taacgccggc
     1201 ggcggtaccg gccatgacag ggtgcagatt gttgcggcgc tgatggccat cgatgccgga
     1261 cttgagcggc tgcggcacgc cgttcttgag aaaggaacgg acgatgatcg ttaaatttca
     1321 tccacgcggt cgcggcggtg gcgccgggcc ggtggactat ctgctgggta aagaccggca
     1381 gcgtgaaggc gccaccgtcc tgcaggggaa gccggaagaa gtccgggagc tgattgacgc
     1441 gtcgccttac gttaagaaat acacctccgg ggtactgtcg tttgcggaag cggatttacc
     1501 ttccggccag cgggaaaagc tgatggcaag ctttgagcgg gttctgatgc ccggacttga
     1561 taaagaccag tacagcatcc tgtgggtgga gcatagtgac aaggggcggc ttgagctgaa
     1621 ttttctgatc ccgaacacgg agctgctgac cggcagacgg ctccagccgt attacgatcg
     1681 cgccgaccgt ccacgcatcg atgcctggca gaccatcgtg aacggcagac tggggctgca
     1741 cgacccgaac gcaccggaga accggcgggc actggtcaca ccgtctgcac tgcctaaagc
     1801 gaagcaggag gctgcagaag cgattacacg cggtctgctt gctcttgcct catccgggga
     1861 gctgaaaacc cgtcaggatg tcactgaggc gctggaaagc gcaggttttg aggtggtccg
     1921 caccacaaaa agcagtatca gcattgccga cccggacggg gggcgaaaca tccgactgaa
     1981 gggagccatt tatgaacagt cttttaacgc tggcgaagga cttagagcag aaatcgaaag
     2041 cgcagcagca gaataccggc gagatgctga aagccgcatt cagcgagcac gagaaatctg
     2101 taaaagcgga actgaacgaa agcgcgaaga gaatcagcgc cgccatcctc gaccacgacc
     2161 ggaaactgtc ctcagccatg agccagcgca cgaaaggcat ggtgcgcatg gtcagccaga
     2221 cgtggctgac catcgtcctg gtctccgcgc tgctgatcgc ctcgagcgcg ggcattctgt
     2281 ggtggcaggg gcagcagata ctcgacaact acacgaccat ccgggagcag aagagcacgc
     2341 aggccatgct gtcagagagg aacagcggcg tgcagctctc gacctgcggc gagcagagac
     2401 gccgctgcgt gaaggtgaac ccggaagcgg gacggttcgg agaggattcg agctggatga
     2461 tactggcggg gaaatagcac atgacggagc tggaaaaaca gttgctgagc gcattagagc
     2521 agctacagca ggactactcg aaaaggctgg acgagtggga gagcgccttc gcggaatggc
     2581 ggacgatgtc tggtcttatg caacgggaga acgcagcgct gagcgagcgc gtcacgggct
     2641 tgagcaggca ggtgcagagt ttgagcgagc agctgcgccg gttgtcgagc gactgaatgc
     2701 cgtcgagctg caccgggagc aggagcgcgt ggtgcagcat cagaaagcgc tggagctgga
     2761 gcgatctcag cgacagcgga cgtataacag cccttcactg tgataacctg ataaaacggg
     2821 gctttcggcg gacatctgcg ctgaaagccg gagccattca cccgactgca tagccatgca
     2881 gccgggtgaa atttatctgg cgcagaatgc gcggtttagc ggagagtttg ctgccggttt
     2941 taccgggctg acgccgcatt tgttccgaac ccgtccgggg cggtgctgat aagggatgtt
     3001 atggtaaatg cggcattttt tattatatgg agtgtatttt tatgagaatt aaaaagcctc
     3061 accttcgtcc gatagtcata accttgtccg ttggtgggat tttgttaact tctatttttc
     3121 tgattgccgt tattatggtt tttcagcgcg aaaatataga aaaagatttg ctttatgcta
     3181 attcatcgta cgctatgaaa atgtcagatg taatgagtgg ttatattgaa atggctcaag
     3241 gtgaattagc atatggagca aaaaaaataa aattaactaa tgatattgac tcacttaaag
     3301 atgaggcgga taggttaaga ttgcagtctg gtatgtttaa ttcagttctt gttgttagta
     3361 atgatgctgt tgttctggcg acttcgccag aatctcttga tttagttggt acccgcttga
     3421 attcaagtgc cagcaaattg gcgattgagg aaaagaaacc attcatatct tcaccgttaa
     3481 aatcagttac tgggaatttg attattttgt tgtcacatcc tatttatgat aagggtggca
     3541 attacatagg gtatgtcggt gggtctatat atctaaaaaa acatagttta tttggcgatg
     3601 ttttgagcag gcattttttc aagaacaaca ctgaaattag cattgttagt gatgatggga
     3661 atgtgatctt taataacgat aaaagtgctg ttgatcggcc tatggttatg tctgatgatt
     3721 tgaaatcaaa gttaactgcg tctgatagag gtgagggggc atttttttct tcggggcata
     3781 gatatcttct tggttatgct agtatgaaaa atactacttg gaatgtgttg gtttatagtc
     3841 gtgctgacag tgtgactact attcttattg cttatgctaa aagtgtactt gttctgctaa
     3901 ttataataat tattgtgttt tcacttattt catatttcat tgcctccagt atttcacttc
     3961 ctttagaaaa gcttgctata tctaccaatg ctaaagatat cggagcttcg ctagtttata
     4021 ttaaagctat caatgcttgg tatgccgaag ctgataggct taaaaaggcg ctttttacgt
     4081 atattaaggt aatgatggaa agagttgatt atctaaatga ggtggcgctt aaagatcccc
     4141 ttaccggcgt gaacaataga ttggggtttt taagtaaaat acagaatcat aagcgggatt
     4201 cagggtattc agttattgta attgatgttg atttttttaa agagataaat gacagtttcg
     4261 ggcatggggt cggagatgag gtgcttgttt ctttggctca tattattaat tcctgttgcc
     4321 gtagtgaaga tgttgtttgt cggtttggtg gcgaagagtt tgttgttttc ctgccgaata
     4381 catctgtggt aacagctaag tgtgttgcgg agcgtattag gagtgttatt gaaagtactg
     4441 tcttccctaa taacttgcgg gtcaccatat ctgctggtgt ggcaacacaa gatgatcctc
     4501 ttggtaggat cgattttttg ctgaaaaatg cttgaaaaat gctgacgatg ctctttatca
     4561 agccaaaagg gaggggcgta ataaagtgat tgtatatagc gctatttgag ttttttgatg
     4621 atgctttacg cgctagtgtg tcgttttttt tgtggcgaag agtgggcaag aagcg
//
