LOCUS       AP031470                3004 bp    DNA     circular BCT 26-APR-2024
DEFINITION  Staphylococcus capitis NBRC 115779 plasmid pSKB0123-3 DNA, complete
            sequence.
ACCESSION   AP031470
VERSION     AP031470.1
DBLINK      BioProject: PRJDB8042
            BioSample: SAMD00651069
KEYWORDS    .
SOURCE      Staphylococcus capitis
  ORGANISM  Staphylococcus capitis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Miura,T., Ohyama,Y., Furukawa,M., Shimamura,M. and Asami,Y.
  TITLE     Complete genome sequence of Staphylococcus capitis strain NBRC
            115779
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Miura,T., Ohyama,Y., Furukawa,M., Shimamura,M. and Asami,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2024) Contact:Takamasa Miura National Institute of
            Technology and Evaluation, Biological Resource Center; 2-5-8
            Kazusakamatari, Kisarazu, Chiba 2920818, Japan URL
            :https://www.nite.go.jp/en/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 126x
            Sequencing Technology :: Illimina MiSeq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Staphylococcus capitis"
                     /mol_type="genomic DNA"
                     /strain="NBRC 115779"
                     /isolation_source="skin epidermis"
                     /host="Homo sapiens"
                     /culture_collection="NBRC:115779"
                     /db_xref="taxon:29388"
                     /plasmid="pSKB0123-3"
                     /geo_loc_name="Japan"
                     /collection_date="2019-05-13"
     gene            complement(344..499)
                     /locus_tag="SKB0123_24630"
     CDS             complement(344..499)
                     /locus_tag="SKB0123_24630"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002437688.1"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class phenol-soluble modulin"
                     /protein_id="BFL68935.1"
                     /translation="MEHISKLGEAIVNTISASQSGDSAELAKSIVNIAANGIGVVSDVA
                     KAFGLM"
                     /name="beta-class phenol-soluble modulin"
     gene            complement(1401..2246)
                     /locus_tag="SKB0123_24640"
     CDS             complement(1401..2246)
                     /locus_tag="SKB0123_24640"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_103357905.1"
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="BFL68936.1"
                     /translation="MDLVENCNTFLSFVTDKTLEKKKLYKSNPCKNRFCPVCAWRKARK
                     DALGLSLMMQYIKQQENKEFIFLTLTTPNVNSDELENEIKGYNNSFRKLIKRKKVDSVI
                     KGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYFTDKRYYISQKEWLNLWRDVTGMPEIT
                     QVRVQKIKQNNNKELYEMAKYSGKDSNYLINQKVFDAFYKSLKGKQILVYSGLFKDARK
                     KLKNGDLDYLKEVDPTEYIYQIFYVWNQKEYLASEIFDLTEEEKSKINHRMIDEIEEEN
                     "
                     /name="protein rep"
     gene            complement(2609..2854)
                     /locus_tag="SKB0123_24650"
     CDS             complement(2609..2854)
                     /locus_tag="SKB0123_24650"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BFL68937.1"
                     /translation="MQDTFSKQFVTGRRIKMECWECGFSTLKIISKDCQDMKNYKACLI
                     FTKCENCNAHDDFFINKDYYGYIDVEAKPLSGEWKL"
                     /name="hypothetical protein"
     Typing          complement(1405..2336)
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.079"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 actagttagc taacacattg cccattccaa ccaaaaattt tctcggcata aatgcatgtg
       61 atatgattaa tgtattactc ctttcatttg aaatatcaaa aactcttctc cgggctactc
      121 attttttgag tagtcttttt attttgcatt ttaagccctt tctaggacat tttattattc
      181 tacgtataaa aaaatagcac gcagtaattt aaactactgc gtgctttata tcacatatta
      241 aaccttttaa ttacttaaga cctgctgtgt taataaagca aataagaggt gaatcaactg
      301 atagttgact cacctcttca tatgtattga tttaaaatgt tgattacatt aaaccaaaag
      361 ctttagcaac atctgatact acaccaatac cgttagccgc aatattaaca attgatttag
      421 ctaattcagc actatctcca gattgagatg ctgaaatagt attaacgata gcttcaccta
      481 attttgaaat atgttccatg gaaaacattc ccccctttta tataaaaaaa ttactctaat
      541 aaaataacat atatcataat atttgtcctc tatctttaaa taatcttaat taattttaaa
      601 ctttcattta ataatcttaa ttaattttaa actttctttt aacataagtt ttattatttc
      661 aataaagaat agacatcaca aatagatttt ctcggcataa atgcatgtga tacgatcaat
      721 gtagtactca ctttcatttg aaatatcaaa aactattctc cagactactc aaaaaataag
      781 tagtcttttt attttgcatt ttaagccctt tctaggacat tttattattc cacgtataaa
      841 aaatacctca aaactttttt cgttcaacag agaggctata aatcatttta aaatttcttt
      901 ctcaacattt ttagaaagaa aaatgtattt ttttatctcg attgctcttc tcaacaaaaa
      961 actaaaacct aaaaaatagg tgtacaatgt aacttttgca ttttcaagag cataagggaa
     1021 tcctgcatta tattagtacg tttcacgtac caatataatg caaaagtatt gatttgacag
     1081 tgtcaaatag gattcttaaa tatgatgcaa aaaatcataa aaacgtactt gaaacgtacc
     1141 taatacgtac tcgatacgta ccaatttttt aagtgacgta cgtgatacgt actaatattt
     1201 aagtacgttt tgagtacgct taaaagcgtt tgttttataa aaaagtaagg aaaataaaat
     1261 tgaatgaaaa aaactaaacg taaaaaaacg ctagcttttt agctaacgtt ttaataaaaa
     1321 tcatcaatat gttcttatct ttttttaaat ccttctgatt ttttacaact cttctacgaa
     1381 aaacttatca caatttaata tcaattttct tcttcaattt catcaatcat tcgatgatta
     1441 atcttacttt tttcttcttc ggttaaatca aaaatttcac ttgctagata ttctttttga
     1501 ttccaaacat aaaaaatttg ataaatatat tcagttggat caacttcttt taagtaatct
     1561 aaatctccat tttttaattt ctttcttgcg tctttaaaca gtccagaata aacaagaatt
     1621 tgttttcctt taagtgattt ataaaatgcg tcaaatactt tttgattaat taaatagttg
     1681 ctatctttac cagaatactt agccatttca tataactctt tattattatt ttgttttatc
     1741 ttttgaactc gaacttgtgt aatttctggc atacctgtta catcgcgcca taaattcaac
     1801 cattcttttt gactaatata atatcgttta tccgtaaaat acgatttatt aactgcaatt
     1861 aacacatgaa aatgaggatt atagtcatct ctttttttat tatacgtaat ctctaactta
     1921 cgaacataac cctttataac actatctact ttttttctct ttataagttt tctaaaagaa
     1981 ttattgtaac cttttatttc attttctaat tcatcactat ttacattagg tgtcgttaaa
     2041 gttaaaaaga taaactcttt gttttcctgc tgcttaatat attgcatcat caatgataaa
     2101 cctaatgcat cttttctcgc ttttcgccat gcacacactg gacaaaatct attcttacaa
     2161 ggatttgatt tatataattt ctttttctct agtgttttat cagtcacaaa ggacaagaat
     2221 gtattacagt tttcaactaa atccatttga ttctccacaa tatgacgttt aataaatttc
     2281 tgaaatactt gatttctttg ttttttctct gtatactttt ccatgttata acacataaaa
     2341 acaactttgt tttctcaaac attatatata aaaaagttgc tttttctcct ttcttgtaaa
     2401 gtttttgatt cgacaccata aactctacta tattaggtac gaaaaagcaa ctttttttgt
     2461 gtttgaagcc agtcatatca ataacttaag ggtagctagg ctcgccggca atagttaccc
     2521 ttattatcaa gataagaaaa aactcgtttt caactcgttt ctaaaaccaa aaattcaaac
     2581 ccaaattcct cgcgcgcgtg aggaaaattt ataatttcca ttccccactt aacggcttgg
     2641 cttctacatc gatataaccg taataatctt tatttataaa aaagtcatca tgagcattac
     2701 aattctcaca cttcgtaaaa attaaacaag ctttataatt tttcatatcc tgacaatcct
     2761 tacttataat ttttaaagtt gaaaaaccac attcccaaca ctccattttt attcttcgac
     2821 cagttacaaa ttgttttgaa aatgtatctt gcataaaaac atttctccct tttataaatt
     2881 ttattatttt aacttaattg ctttattcca attgcttttt ggttggaacc tacagggctt
     2941 tatgtgttgt tgagttggta ctttcttggg attaatccca attcaattcc caaccaactc
     3001 gcta
//
