LOCUS       AP028573                3223 bp    DNA     circular BCT 26-JUL-2023
DEFINITION  Serratia marcescens QC13 plasmid pQC13_2 DNA, complete sequence.
ACCESSION   AP028573
VERSION     AP028573.1
DBLINK      BioProject: PRJDB10568
            BioSample: SAMD00247386
            Sequence Read Archive: DRR253482, DRR493273
KEYWORDS    .
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Complete genome of Serratia marcescens QC13
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2023) Contact:Debora Satie Nagano Faculty of
            Medical Sciences, Kyushu university, Department of Bacteriology;
            3-1-1 Maidashi, Fukuoka, Fukuoka 812-8482, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 99x
            Sequencing Technology :: MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST v.1.2.0 (https://dfast.nig.ac.jp).
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="QC13"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pQC13_2"
                     /geo_loc_name="Japan"
                     /collection_date="2012"
     gene            complement(466..810)
                     /locus_tag="SMQC13_48120"
     CDS             complement(466..810)
                     /locus_tag="SMQC13_48120"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEO07085.1"
                     /translation="MADKRSKMLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPAR
                     AGKLPSISPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHA
                     VLEKGADDDR"
                     /name="hypothetical protein"
     gene            1428..1598
                     /locus_tag="SMQC13_48130"
     CDS             1428..1598
                     /locus_tag="SMQC13_48130"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEO07086.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(2307..2522)
                     /locus_tag="SMQC13_48140"
     CDS             complement(2307..2522)
                     /locus_tag="SMQC13_48140"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEO07087.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="hypothetical protein"
     gene            complement(2526..3011)
                     /locus_tag="SMQC13_48150"
     CDS             complement(2526..3011)
                     /locus_tag="SMQC13_48150"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEO07088.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="hypothetical protein"
     ARG             complement(1808..2139)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(886..1077)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          1057..1540
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(4..476)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.203"
                     /coverage="99.0"
                     /evalue="1.95e-96"
     Typing          complement(2210..3222)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.294"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gagaccagca cccgccggtt ctccggcgcg ttcgggtcat gcagccccag cctgccgttc
       61 actatggtct gccaggcatc gatgcgcgga cggtcggcgc ggtcgtaata cggctgtagc
      121 cgcttgccgg tcagaagctc cgtgttcggg atcaggaagt tcagctccag ccgccccttg
      181 tcccggtgct caacccacag cacgctgtac tggtctttat cgagtccggg catcagaacc
      241 cgctcgaaac tcgccatcag cttttcgcgc tggccgggcg gtaaatcctg ttcggcaaaa
      301 gacagaacgc cggaagtgta ctttttggcg tagggcgagg cgtcgataag ctcccggact
      361 tcatccggct tcctctgcag aacgctggcg ccgtcgcgct ggcgatcttt acccagcaga
      421 taatcgaccg gcccgccgcc gccgccgcgc ccccgaggat gaaacttaac gatcatcatc
      481 agcacccttt tccagtacgg catgccgcaa ccgctcgagt ccggcatcga tggccatcag
      541 cgcggcgaca atctgcacgc ggtcgtgtcc gcttccacca ccggcgttaa cctggcgggc
      601 aatctggtta aggttgttcc ccatgccggc aagctgacga agcagcgccg gcgagatcga
      661 cggaagtttg ccggcgcgtg cgggcttctc gtccaggcac gtctgccgca tccaggccgc
      721 gagttgctta ccctcgcagc gctccagcag acgccggtgc tcgtcctcag tcacccacat
      781 ggtgagcatt ttgctgcgtt tgtctgccaa tccggcctcc tgataacgcc gggacggacg
      841 ggaaatcttt tcccggtcgg cacggtgttg gacaagccgc aggcgcggca gtggttttag
      901 cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct agcggagtgt atactggcta
      961 aacatgttat gacggagtgg caatttatga aagtgcttca tgtgacaggg gaaaaatgcg
     1021 gctgccgggc gtaagtgcaa aatgcaggtg gtgatgaaat gacgcctcct cgctcactcg
     1081 gtcgctacgc tcctgccgtg agactgcggc gggcgttacc agctcacaga ttacgggata
     1141 agcaaatgcc gctcgaagca ggaaaggcca agaaaaggat gcggagttgc cgtttttcca
     1201 taggctccgc ccccctgacg agtatcacga aaatgacgct caaatcagcg gtggcgaaac
     1261 ccgatgcggc ttaaagatac caggcgtttc cccctggtgg ctccctcgtg ctcccccgca
     1321 ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcggttt ctcattccac
     1381 gcctgaaact cggttccggg taggcagttc gctccaggat ggactgtatg cacgaacccc
     1441 ccgttcagtc cgactaccac gcccgttccg gtaactatca acttgagtcc aacccggaaa
     1501 gacacgacaa atcgccagtg gcggtagcca ttggtaactg ggttcacgga gcagagattg
     1561 tagagaatgc ctacagagtt cttgaagtga aagcctgagt gcggctacac tgaaaggaca
     1621 gtttaggtat ctgcgctccg tgaaagccag ttaccatcgg aacaaagagt tggtagctct
     1681 gaattccggc aaacgaacca ccgttggtag cggtggtttt tttgtttaca gggaaaaaga
     1741 ttacgcgcag aaagaaagga tctcaaggaa atccttttgc tttggccaat atgcttcggt
     1801 aaaaagttaa tgcgcagaag attttgaaaa aatattaata accaaaactc caacgcaaat
     1861 aaggaacatt cctgcaattg cgggccaatc aagtttttga ccgctaacca accaaccagc
     1921 taggcttatt agtacaattc ccgcaccaga ccaaattgcg taagcaatac cggtaggtat
     1981 attttccaat gtttgggaaa gcagataaaa ggcagcgcaa taacttattg cagttcctac
     2041 agacggccac aggcgtgtaa atccttctga atatttcata aagatggtgc ctatgacttc
     2101 agccacaata gcccctccca ggaaaatata tgtattcata aaaatacctc atgttgaaaa
     2161 atttaaatat ctttacataa caactaatta atagaacccg gcttatcata gcgaaggacc
     2221 atgatgctgc cactgcgatc gttccagctc cagcgctttc tggtgctgca ccgcccgctc
     2281 ctgctgccgg tgagtttcta tcgcgttcag cctttcgaca accggcgcag ctgctcgctc
     2341 aaactctgca cctgcctgct caagaccgtg acgcgctcgt tcagcgccgc gttctcccgt
     2401 tgaataagac cagacatcgt ccgccattcc gcgaaggcgt tctcccactc gtccagcctt
     2461 ttcgagtagt cctgctgtag ctgctctaat gcgctcagca actgtttttc cagctccgtc
     2521 atgtgctatt tccccgccag tatcatccag ctcgagtcct ctccgaactg tcccgcttcc
     2581 gggttcaccc tcacgcagcg gcgtctctgc tcgccgcagg tcgagagctg tacgccgctg
     2641 ttcctctctg acagcatggc ctgcgtgctc ttctgctccc ggatggtcgt atagttctcg
     2701 agtatctgct gcccctgcca ccacagaatg cccgcgctcg acgctatcag cagcgcggag
     2761 accagaacga tggtcagcca cgtctggctg accatgcgca gcatcccttt cgtgcgctgg
     2821 ctcatggctg aggacagctt ccggtcgtgg tcgaggatgg cggcgctgat tctcttctcg
     2881 ctttcgctca gttccgctct gacagacttc tcgtgctcgc tgaatgcggc tttcagcatc
     2941 tcgccggtag tctgctgctg cgctttcgat ttctgctcta agtccttcgc cagcgttaaa
     3001 agactgttca tagatggctc ccttcagtcg gatgtttcgc cccccgtccg ggtcggcaat
     3061 gctgatgctg ctttttgtgg tgcgcaccac ctcaaaacct gcgctttcca gcgcctcagt
     3121 gacgtcctga cgcgttttca gctccccgga tgaggcaagg gcaagcaggc cgctcgtaat
     3181 cgcctgggcg gcttcctgct tcgcttccgg cagcgcggaa ggc
//
