LOCUS       AP028560                3223 bp    DNA     circular BCT 26-JUL-2023
DEFINITION  Serratia marcescens QC08 plasmid pQC08_4 DNA, complete sequence.
ACCESSION   AP028560
VERSION     AP028560.1
DBLINK      BioProject: PRJDB10568
            BioSample: SAMD00247381
            Sequence Read Archive: DRR253477, DRR493271
KEYWORDS    .
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Complete genome of Serratia marcescens QC08
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2023) Contact:Debora Satie Nagano Faculty of
            Medical Sciences, Kyushu university, Department of Bacteriology;
            3-1-1 Maidashi, Fukuoka, Fukuoka 812-8482, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 126x
            Sequencing Technology :: MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST v.1.2.0 (https://dfast.nig.ac.jp).
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="QC08"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pQC08_4"
                     /geo_loc_name="Japan"
                     /collection_date="2011"
     gene            33..203
                     /locus_tag="SMQC08_53210"
     CDS             33..203
                     /locus_tag="SMQC08_53210"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN96708.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(912..1127)
                     /locus_tag="SMQC08_53220"
     CDS             complement(912..1127)
                     /locus_tag="SMQC08_53220"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN96709.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="hypothetical protein"
     gene            complement(1131..1616)
                     /locus_tag="SMQC08_53230"
     CDS             complement(1131..1616)
                     /locus_tag="SMQC08_53230"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN96710.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="hypothetical protein"
     gene            complement(2294..2638)
                     /locus_tag="SMQC08_53240"
     CDS             complement(2294..2638)
                     /locus_tag="SMQC08_53240"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN96711.1"
                     /translation="MADKRSKMLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPAR
                     AGKLPSISPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHA
                     VLEKGADDDR"
                     /name="hypothetical protein"
     ARG             complement(413..744)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(2714..2905)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          34..203
                     /name="rep_cluster_2405"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.17e-84"
     Typing          2885..3223
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.573"
                     /coverage="93.0"
                     /evalue="6.67e-82"
     Typing          complement(815..2304)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ccgggtaggc agttcgctcc aggatggact gtatgcacga accccccgtt cagtccgact
       61 accacgcccg ttccggtaac tatcaacttg agtccaaccc ggaaagacac gacaaatcgc
      121 cagtggcggt agccattggt aactgggttc acggagcaga gattgtagag aatgcctaca
      181 gagttcttga agtgaaagcc tgagtgcggc tacactgaaa ggacagttta ggtatctgcg
      241 ctccgtgaaa gccagttacc atcggaacaa agagttggta gctctgaatt ccggcaaacg
      301 aaccaccgtt ggtagcggtg gtttttttgt ttacagggaa aaagattacg cgcagaaaga
      361 aaggatctca aggaaatcct tttgctttgg ccaatatgct tcggtaaaaa gttaatgcgc
      421 agaagatttt gaaaaaatat taataaccaa aactccaacg caaataagga acattcctgc
      481 aattgcgggc caatcaagtt tttgaccgct aaccaaccaa ccagctaggc ttattagtac
      541 aattcccgca ccagaccaaa ttgcgtaagc aataccggta ggtatatttt ccaatgtttg
      601 ggaaagcaga taaaaggcag cgcaataact tattgcagtt cctacagacg gccacaggcg
      661 tgtaaatcct tctgaatatt tcataaaggt ggtgcctatg acttcagcca caatagcccc
      721 tcccaggaaa atatatgtat tcataaaaat acctcatgtt gaaaaattta aatatcttta
      781 cataacaact aattaataga acccggctta tcatagcgaa ggaccatgat gctgccactg
      841 cgatcgttcc agctccagcg ctttctggtg ctgcaccgcc cgctcctgct gccggtgagt
      901 ttctatcgcg ttcagccttt cgacaaccgg cgcagctgct cgctcaaact ctgcacctgc
      961 ctgctcaaga ccgtgacgcg ctcgttcagc gccgcgttct cccgttgaat aagaccagac
     1021 atcgtccgcc attccgcgaa ggcgttctcc cactcgtcca gccttttcga gtagtcctgc
     1081 tgtagctgct ctaatgcgct cagcaactgt ttttccagct ccgtcatgtg ctatttcccc
     1141 gccagtatca tccagctcga gtcctctccg aactgtcccg cttccgggtt caccctcacg
     1201 cagcggcgtc tctgctcgcc gcaggtcgag agctgtacgc cgctgttcct ctctgacagc
     1261 atggcctgcg tgctcttctg ctcccggatg gtcgtatagt tctcgagtat ctgctgcccc
     1321 tgccaccaca gaatgcccgc gctcgacgct atcagcagcg cggagaccag aacgatggtc
     1381 agccacgtct ggctgaccat gcgcagcatc cctttcgtgc gctggctcat ggctgaggac
     1441 agcttccggt cgtggtcgag gatggcggcg ctgattctct tctcgctttc gctcagttcc
     1501 gctctgacag acttctcgtg ctcgctgaat gcggctttca gcatctcgcc ggtagtctgc
     1561 tgctgcgctt tcgatttctg ctctaagtcc ttcgccagcg ttaaaagact gttcatagat
     1621 ggctcccttc agtcggatgt ttcgcccccc gtccgggtcg gcaatgctga tgctgctttt
     1681 tgtggtgcgc accacctcaa aacctgcgct ttccagcgcc tcagtgacgt cctgacgcgt
     1741 tttcagctcc ccggatgagg caagggcaag caggccgctc gtaatcgcct gggcggcttc
     1801 ctgcttcgct tccggcagcg cggaaggcga gaccagcacc cgccggttct ccggcgcgtt
     1861 cgggtcatgc agccccagcc tgccgttcac tatggtctgc caggcatcga tgcgcggacg
     1921 gtcggcgcgg tcgtaatacg gctgtagccg cttgccggtc agaagctccg tgttcgggat
     1981 caggaagttc agctccagcc gccccttgtc ccggtgctca acccacagca cgctgtactg
     2041 gtctttatcg agtccgggca tcagaacccg ctcgaaactc gccatcagct tttcgcgctg
     2101 gccgggcggt aaatcctgtt cggcaaaaga cagaacgccg gaagtgtact ttttggcgta
     2161 gggcgaggcg tcgataagct cccggacttc atccggcttc ccctgcagaa cgctggcgcc
     2221 gtcgcgctgg cgatctttac ccagcagata atcgaccggc ccgccgccgc cgccgcgccc
     2281 ccgaggatga aacttaacga tcatcatcag cacccttttc cagtacggca tgccgcaacc
     2341 gctcgagtcc ggcatcgatg gccatcagcg cggcgacaat ctgcacgcgg tcgtgtccgc
     2401 ttccaccacc ggcgttaacc tggcgggcaa tctggttaag gttgttcccc atgccggcaa
     2461 gctgacgaag cagcgccggc gagatcgacg gaagtttgcc ggcgcgtgcg ggcttctcgt
     2521 ccaggcacgt ctgccgcatc caggccgcga gttgcttacc ctcgcagcgc tccagcagac
     2581 gccggtgctc gtcctcagtc acccacatgg tgagcatttt gctgcgtttg tctgccaatc
     2641 cggcctcctg ataacgccgg gacggacggg aaatcttttc ccggtcggca cggtgttgga
     2701 caagccgcag acgcggcagt ggttttagcg ggtttcgggg cgcagccctg aaccagtcac
     2761 gtagcgctag cggagtgtat actggctaaa catgttatga cggagtggta atttatgaaa
     2821 gtgcttcatg tgacagggga aaaatgcggc tgccgggcgt aagtgcaaaa tgcaggtggt
     2881 gatgaaatga cgcctcctcg ctcactcggt cgctacgctc ctgccgtgag actgcggcgg
     2941 gcgttaccag ctcacagatt acgggataag caaatgccgc tcgaagcagg aaaggccaag
     3001 aaaaggatgc ggagttgccg tttttccata ggctccgccc ccctgacgag tatcacgaaa
     3061 atgacgctca aatcagcggt ggcgaaaccc gatgcggctt aaagatacca ggcgtttccc
     3121 cctggtggct ccctcgtgct cccccgcatt cctgcctttc ggtttaccgg tgtcattccg
     3181 ctgttatggc cgcggtttct cattccacgc ctgaaactcg gtt
//
