LOCUS       AP028552                4938 bp    DNA     circular BCT 26-JUL-2023
DEFINITION  Serratia marcescens QC07 plasmid pQC07_3 DNA, complete sequence.
ACCESSION   AP028552
VERSION     AP028552.1
DBLINK      BioProject: PRJDB10568
            BioSample: SAMD00247380
            Sequence Read Archive: DRR253476, DRR493270
KEYWORDS    .
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Complete genome of Serratia marcescens QC07
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4938)
  AUTHORS   Nagano,D.S., Taniguchi,I., Ono,T., Katsura,K. and Hayashi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2023) Contact:Debora Satie Nagano Faculty of
            Medical Sciences, Kyushu university, Department of Bacteriology;
            3-1-1 Maidashi, Fukuoka, Fukuoka 812-8482, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 175x
            Sequencing Technology :: MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST v.1.2.0 (https://dfast.nig.ac.jp).
FEATURES             Location/Qualifiers
     source          1..4938
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="QC07"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /plasmid="pQC07_3"
                     /geo_loc_name="Japan"
                     /collection_date="2011"
     gene            complement(1284..1856)
                     /locus_tag="SMQC07_51740"
     CDS             complement(1284..1856)
                     /locus_tag="SMQC07_51740"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN91375.1"
                     /translation="MWQEKNAAAERQQNMRYRIYSASSLTDSLRSVVRLRRAVPAYRRG
                     GNFLGDARKKLNREAIRPRRSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLVA
                     PSCALLFLPFGLPVSFRCYGRVCLIPRLTLSSGKAVRSKLDCMHEPPVQSDRCALSGNY
                     QLESNPEKHDKAPLAAATGNRFRGGES"
                     /name="hypothetical protein"
     gene            2068..2391
                     /locus_tag="SMQC07_51750"
     CDS             2068..2391
                     /locus_tag="SMQC07_51750"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN91376.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTAKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGVGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="hypothetical protein"
     gene            3069..3560
                     /locus_tag="SMQC07_51760"
     CDS             3069..3560
                     /locus_tag="SMQC07_51760"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN91377.1"
                     /translation="MSSLLTLAKDLEQQSKAQQKSTGEMLKAAFSEHEQSVRAELNASA
                     RRISDAISAHEQSMSEAMEKNRRSVLLTAGRTWLTILMVSALLIATSGSILWWQGRQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESNDGRRFLILPPGMQAEAIPYDGTTWIRLKQE
                     "
                     /name="hypothetical protein"
     gene            3567..3782
                     /locus_tag="SMQC07_51770"
     CDS             3567..3782
                     /locus_tag="SMQC07_51770"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN91378.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     VLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="hypothetical protein"
     gene            3970..4089
                     /locus_tag="SMQC07_51780"
     CDS             3970..4089
                     /locus_tag="SMQC07_51780"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEN91379.1"
                     /translation="MKILNVIEALLNCFYLVMELCELPERHLPVFKAFALILV"
                     /name="hypothetical protein"
     Typing          1781..1953
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="9.14e-86"
     Typing          complement(1310..1856)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.545"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          2069..2385
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.509"
                     /coverage="99.0"
                     /evalue="3.03e-59"
     Typing          2382..3883
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="83.692"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aggggagaaa gctttagtgg caagtacctg cggctggcaa agggaaatcg ttccgtatgg
       61 cttgaagcca gttatatccc cgtttctgac aggcgcggcc gtgttatcag agtcattaaa
      121 attgctgccg atatttctga gcgcgtgcat tctgctcttg agcaggaagc agtcgtaaat
      181 gccataaacc gttctatggc catcatcacc ttcaatcctg aagggatcgt gcttgaagca
      241 aatgaaaatt tcgtcaatgc cactggctat aagcgggatg aaatcatagg taagcatcat
      301 cgtctgttct gtgccgagac gctttacaaa agtgatgaat accgacattt ctgggagagt
      361 ctgaatcaag gtgagttttt ttctggtctg tttccacgcc ttaaccgtca gggagaccct
      421 ctgtggttcc gtgcaactta taaccctgtc tttaacagtg atgggcagct ttataaaatt
      481 gtgaaattcg ctacagatgt tacggctgat gtcctgcgaa accagagaga gcaagaggct
      541 gctgtgcatg catgggatat ggccgtgcag acccgagaaa gtgcgcagaa cggtgccaat
      601 gttattgaaa atagcatcct tatgattgac agaattgcgc aggggatggg ggctgtctcc
      661 accgatatct cacggctcaa caatcagtct gaaagtattg acgatatggt ggaaaccatc
      721 cggaagtttg ccatgcagac aagacttatt gcactgaatg ccgcgattga agcagcaagg
      781 gctggcgcat ccggaagaag ttttgcggtt gttgccgcag aagtgcgtaa tcttgcggcg
      841 agcgtcagta gcgcgactga agaaattgag caagtcgtgg ccagcaatag tcaactggcc
      901 aaggatgttc tctgtggcat tgaaaacagc ctgatgaaca ctcgggaagg ggttacactc
      961 atgcgcgaag cgggtgaagt tatgaccagc attcagagga atgctgcagg ggttgagact
     1021 gcggttaagg atgtcgccat ttcagttaaa gccggatagg ccatggtgca tatccccata
     1081 tctgtcgaac atcacagatg atcttcttga gatcctttcc gttgcgtcgt aatctcttgc
     1141 tctgaaaacg aaaaaaccac ccggcaaggt ggctttttcg aaggttcgca agagttgacg
     1201 ctcttttgaa ccgcggtaac tggcttggag gagcacagtc accaaaactg tcctttcagt
     1261 gtagccttat cgcacccgaa acttcaagac tctcctcctc taaacctgtt accagtggct
     1321 gctgccagtg gcgctttgtc gtgtttttcc ggattggact caagttgata gttaccggat
     1381 aaggcgcagc ggtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact
     1441 gccttcccgg aactgagtgt caggcgtgga atgagacaaa cgcggccata acagcggaat
     1501 gacaccggta aaccgaaagg caggaacagg agagcgcacg agggagccac cagggggaaa
     1561 cgcctggtat ctttatagtc ctgtcgggtt tcgccaccac tgatttgagc gtcagatttc
     1621 gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc ttcgccgcgg ccttatcgct
     1681 tccctgttaa gcttctttct ggcatctccc aggaaatttc cgccccgcct gtaagccggt
     1741 accgctcgcc gcagccgaac gaccgagcgc agcgagtcag tgagcgagga agcggaatat
     1801 atcctgtatc gcatattctg ctgacgctcc gctgctgcat ttttctcctg ccacatgaag
     1861 cacttcactg atattcgcat ccgtgccaac atagtaagcc agtatacact ccgctagcgc
     1921 tacgtgactg gttcagggct gcgccccgaa acccgctaac agccactgac gcgcctgcgg
     1981 cttgtccaac cccgcgccga ccgggaaagg ttttcccgcc cgtcccgggg ttatcaggag
     2041 actgttttgt cagagaaacg gaacaagatg ctcaccatgt gggtgacgga ggatgagcac
     2101 aggcggctac ttgagcgctg cgacggcagg cagctggcgg cgtggatgcg gcagacctgc
     2161 ctggacgaaa agccggctcg taccgcaaaa cttccttcga tctcgccggc gctgctgcgc
     2221 cagcttgccg gtatgggcaa caacctgaac cagatagccc gccgtgttaa cgccggcgtc
     2281 ggtaccggtc atgaccgggt gcagattgtg gcggcgctga tggccatcga tgccgggctt
     2341 gagcggctgc ggcacgccgt tcttgagaaa ggaacggacg atgatcgtta aatttcatcc
     2401 acgcggtcgc ggcggtggcg ccgggccggt ggactatctg ctgggtaaag accggcagcg
     2461 tgaaggcgcc agcgtcctgc aggggaagcc ggaagaagtc cgggagctga tcgacgcgtc
     2521 gccttacgtg aagaaataca cctccggcgt cctgtcgttt gcggaggccg atctgcctcc
     2581 cggccagcgg gaaaaactga tggccagctt cgagcgggtt ctgatgcccg gacttgataa
     2641 agatcagtac agcattctgt gggtggagca cgaggacaag gggcgtctgg agctgaactt
     2701 tctgatcccc aataccgagc tgctgaccgg caggcggctc cagccgtact acgaccgcgc
     2761 cgaccggccg cgtatcgatg cctggcagac catcgtgaac ggcagactgg ggctgcacga
     2821 tccgaacgcg ccggaaaacc gccgggcgct ggtcacgccg gccggactgc cgaaaacgaa
     2881 gcaggaagcc gcagaagcca tcacccgtgg actgctgagc ttagcctcgt ccggggagct
     2941 gaaaagccgt caggacgtca ctgaggctct tgaaggtgca ggttttgagg tggtgcgtac
     3001 aacgaaaagc agtatcagca ttgccgaccc tgacgggggg cgaaacatcc gactgaaggg
     3061 agccatctat gagcagtctt ttaacgctgg cgaaggactt agagcagcaa tcgaaagcgc
     3121 agcagaagag taccggcgag atgctgaaag ccgcattcag cgagcacgag cagtctgtca
     3181 gagcggaact gaacgcaagc gcgaggagaa tcagcgacgc catcagcgcc cacgagcaga
     3241 gtatgagcga ggcgatggag aaaaaccggc ggagcgtgtt gctgacggcc gggaggacat
     3301 ggctcaccat cctgatggtg tcagcgctgc tgatcgccac gagcgggagc attctgtggt
     3361 ggcagggacg gcagataacc gacaattaca cacatcttcg tcagcaggaa gataccctgg
     3421 cgaaaatgac cgcccggacg tggggagtac gctatcagga gagcaacgac ggccggaggt
     3481 tccttatcct gccgccgggg atgcaagccg aagccatccc ctacgacggg acgacctgga
     3541 tccgcctgaa acaggagtag cggaaaatga cagagctgga aaagcagttg ctgagcgcat
     3601 tagagcagct acagcaggac tactcgcaaa ggctggacga atgggagagc gccttcgcgg
     3661 aatggcggag catgtgtgga cttatgcaac gggagaacgc ggtgctgaac gagcgcgtgt
     3721 cggacttgag cacgcaggtg ctgagtttaa gcgagcagct gcgccgcttg tccgggaact
     3781 gaatgccatc gaggagaagg ctgcactgga gtatcagcgt cagaacgagc tggagctgac
     3841 gctccgacag aagcagaaga gtttcgatgg tccgaagatg aggtgacagc ccgcacgaag
     3901 aagggctcat cgcgttcctg ctaaataggc tgactaccgg aatggtagtg acttatcccg
     3961 gaggaagtga tgaaaattct caacgttatt gaagccctgc tgaactgttt ttacctggtg
     4021 atggagctgt gtgagttgcc ggagaggcat ttgccggttt ttaaggcgtt cgcgctgatt
     4081 ttagtgtgac tttacgctgc atgcatctgg ctgcatgact atgcatcagt gtaatatcca
     4141 gcggctgcgt ttttggtgtt ttttcgtcat gtctgtcgcc actttctcgc gtctggcacc
     4201 ggaaacgcag ccaaccccgt ttctgcggtg cgggcaaggg gtgttatgtt aaaagccgag
     4261 gtctggcgga tacggaaaaa attatgccgg ccgggcttat gcccgcggca atccggccga
     4321 tacttaaatt atccttcaca aaggatgtgc tgcgatccag gcagttgagt gttttccggc
     4381 tcccggatgt gagccatttt tttgccttct gatgcctgtt aatgcatgcg gagctgcgct
     4441 ggttcttcca agattgatag acgccagctt ctctgctgga gccggcggat ttgccgtaaa
     4501 tatgaacatt ttcttattgt tcagcccgct aaagatggcg ggttttttac gcgtgaaatc
     4561 cggagccgga catcatgccg gcatggctga agagcgggct ttttcccgcc ctgtcgcagt
     4621 aatatataac gctacataag gagtagccga taaccatggc agtacttaca ttatccgggc
     4681 aatctgattc atatgttttc acttaaaaat atgttctccc tgaacctcca gcgatcagcc
     4741 atttcgtatg acgcaatttg tcagaataag cctgtcattg agttcagtcc ggagggggtg
     4801 ataaataaag ccagcccgct ttttctctcc actatggggt acagggctga tgaaataatc
     4861 ggtcaccacc atcgtatatt ctgcccgccc tcgctggtaa gttcaccgga atacagccag
     4921 ttctggcagc gccttgcc
//
