LOCUS       AP028326                2326 bp    DNA     circular BCT 03-APR-2024
DEFINITION  Staphylococcus epidermidis KSE124-2 plasmid pKSE124-2-4 DNA,
            complete sequence.
ACCESSION   AP028326
VERSION     AP028326.1
DBLINK      BioProject: PRJDB16027
            BioSample: SAMD00623186
            Sequence Read Archive: DRR483623, DRR486908
KEYWORDS    .
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1
  AUTHORS   Hisatsune,J., Komatsuzawa,H. and Sugai,M.
  TITLE     Complete nucleotide sequence of Staphylococcus epidermidis KSE124-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Hisatsune,J., Komatsuzawa,H. and Sugai,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2023) Contact:Junzo Hisatsune National Institute
            of Infectious Diseases; Aoba-cho 4-2-1, Higashimurayama 189-0002,
            Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.5.0
            Genome Coverage       :: 100X
            Sequencing Technology :: Illumina MiSeq; oxford nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST v.1.2.18 (https://dfast.nig.ac.jp).
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="KSE124-2"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="pKSE124-2-4"
                     /geo_loc_name="Japan:Hiroshima"
                     /collection_date="2016-11-17"
     gene            522..1520
                     /gene="repU"
                     /locus_tag="KSE1242_23420"
     CDS             522..1520
                     /gene="repU"
                     /locus_tag="KSE1242_23420"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002322009.1"
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="BEJ47354.1"
                     /translation="MQFNTTRYIDENQDNETLKDMTRSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLYKTWFCKSKLCPVCNWRRSMKNSYQAQKVI
                     EAVVKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTESFRRLFKYKKVSKNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENSYFKNKANYITQEEWINLWQKALQVDYKPVANIKAI
                     KPNKKGDKDIQAAIKETSKYSVKSSDYLTGNHEKDAEIVQDLEQGLYRKRMLSYGGLLK
                     QKHKLLNLDDAEEGNLIQTSDEEKTTEEEQKAHSITAIWNFEKQNYFLKNL"
                     /name="repU"
     Typing          523..1520
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.513"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tccattattt cgaccccttt tattaattga tttaaggaaa cgttgaataa tttagtgatt
       61 tttaaaattg tttttaaatc aggattgctt atttctcttt cccaattgga aatagagtga
      121 cgtgatactt ctaacttttc tgctaatttt tcttgtgaca tatttttatt ctttcttaat
      181 ttttgaatct gtttcccaat tttagtttcc aaattattgt ctccttggtt ttaagatatc
      241 tttgattttg atttattcta ccgaaattta tgaacatagc taaattttat gtaaaaaata
      301 gtgaacaata ctcatttttt aggggtttag aaacgagttg aaaacgagtt tcttcttgtc
      361 ttgatactat atagaaataa cgttcttttt taaaaatatg atttatcgtt gatatgacag
      421 tatttttatt tgtttttgtg gttgaaaaga aaatttgaca tgaaaaaacc ccagttatat
      481 tattaaggtg tcgaatctta aataaaactg ggggcttttt tatgcaattt aatactacaa
      541 gatatataga cgaaaatcaa gataacgaaa cattaaaaga tatgactaga agtgggaaac
      601 aacgcccatg gagagagaaa aaaatcgaca atgtaagtta tgcagatata ctggaaattt
      661 taaaaatcaa aaaggctttt aacgtaaaac aatgtggtaa cgtcttagaa tttaagccga
      721 ctgatgaagg gtatttaaaa ctttataaaa catggttttg taagtctaaa ttatgtccgg
      781 tttgtaattg gaggcgttca atgaaaaata gttatcaagc tcaaaaagtc attgaagcag
      841 tggttaaaga aaagccaaaa gcacgttggt tattcttaac actttcaaca aaaaatgcta
      901 tagacggtga tactttagaa caaagtttaa agcacttaac tgaatcattt agaagattat
      961 ttaaatataa aaaagttagt aaaaatttaa ttgggtttat gcgttcaaca gaagtgaccg
     1021 ttaataaaaa tgacggcagt tataatcaac atatgcatgt tttattgtgt gtggaaaata
     1081 gttattttaa gaataaagct aattatatta cgcaagaaga gtggatcaat ttatggcaaa
     1141 aagcacttca agttgattac aaaccagtcg caaatatcaa agcaattaaa ccgaataaaa
     1201 aaggcgataa agatatacaa gctgcaatta aagagacatc aaaatactcg gttaagtcgt
     1261 ccgattactt aacaggaaac catgaaaaag acgcagaaat tgttcaagat ttagaacaag
     1321 gtttatacag aaaacgcatg ttaagttacg gtggtttact taaacaaaaa cataaacttt
     1381 taaatttaga cgatgccgaa gaaggtaatt taattcaaac gagcgatgaa gaaaaaacga
     1441 ccgaagaaga acaaaaagcc cattcaatta cggctatttg gaatttcgaa aaacaaaatt
     1501 atttcttaaa aaatttgtaa cgttagctta tcaaagctag cgttttttta tgcttttttg
     1561 cccctgcagg aactatagcg ttcaaccagc atggttgccc attttttatg ccaattttta
     1621 aatttgcatg taaatgggca gtgtctcaaa aattcaacac tggttttgct cgaattttag
     1681 tttgtgaaat taagatatat ttatttggct catatttgct ttttaaaagc ttctgtaggt
     1741 ttttaggcat aaaactatat gatttacccc taaatcttta aaatgccccc ttaaaattca
     1801 aaataaaggc atttaaaatt taaatagttc ttgtgataaa gtttgctaaa aaggagtgat
     1861 tctatgactg ctatgtggtt atcgattata ggtatgtggt tttgtattgg aatggcattt
     1921 tttgctatca aagtgagtaa gaataaaaag tagaccacgt atttatgccg agaaaattta
     1981 ttgtgcgttg agaagaaccc ttaactaaac ttggagacga atgtcggcat agcgtgagct
     2041 attaagccga ccattcgaca agttttggga ttgttaaggg ttccgaggct caacgtcaat
     2101 aaagcaattg gaataaagca atatttaatt tatttctatg ttatttttat cgtcacttgg
     2161 ttttaaaagt gctaatattc cttctataat tcctattaca cctggtatac ctgtccaaca
     2221 aaataataaa taaagtatgc cttttttatt ttgtttaaca taaaatttgt ggatacctag
     2281 tccacctaaa aagaatgcta gtgcagaata aatatattta ttggtt
//
