LOCUS       AP027796                6541 bp    DNA     circular BCT 03-NOV-2023
DEFINITION  Escherichia coli 2017.06.05CC plasmid p2017.06.05CC_6 DNA, complete
            sequence.
ACCESSION   AP027796
VERSION     AP027796.1
DBLINK      BioProject: PRJDB14867
            BioSample: SAMD00562594
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hoang,H.T.T., Yamamoto,M., Calvopina,M., Bastidas-Caldes,C.,
            Khong,D.T., Nguyen,T.N. and Yamamoto,Y.
  TITLE     Comparative genome analysis of colistin-resistant Escherichia coli
            strains possessing mcr isolated in Ecuador and Vietnam
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6541)
  AUTHORS   Yamamoto,Y. and Hoang,H.T.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2023) Contact:Yoshimasa Yamamoto The United
            Graduate School of Drug Discovery and Medical Information Sciences,
            Gifu University; Yanagido 1-1, Gifu 501-1194, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 183x
            Sequencing Technology :: MGI DNBSEQ-G400RS; ONT MinION Mk1c
            ##Genome-Assembly-Data-END##
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..6541
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2017.06.05CC"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2017.06.05CC_6"
                     /geo_loc_name="Viet Nam:Thai Binh"
                     /collection_date="2017"
     gene            complement(558..791)
                     /locus_tag="VEE55_49200"
     CDS             complement(558..791)
                     /locus_tag="VEE55_49200"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63721.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="hypothetical protein"
     gene            complement(798..1358)
                     /locus_tag="VEE55_49210"
     CDS             complement(798..1358)
                     /locus_tag="VEE55_49210"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63722.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="hypothetical protein"
     gene            complement(2036..2374)
                     /locus_tag="VEE55_49220"
     CDS             complement(2036..2374)
                     /locus_tag="VEE55_49220"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63723.1"
                     /translation="MKREKMLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTG
                     KLPTLSPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVR
                     EQGVRDDS"
                     /name="hypothetical protein"
     gene            2423..2614
                     /gene="rop"
                     /locus_tag="VEE55_49230"
     CDS             2423..2614
                     /gene="rop"
                     /locus_tag="VEE55_49230"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002213433.1"
                     /codon_start=1
                     /transl_table=11
                     /product="rop protein"
                     /protein_id="BEC63724.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="rop"
     gene            complement(3897..4427)
                     /locus_tag="VEE55_49240"
     CDS             complement(3897..4427)
                     /locus_tag="VEE55_49240"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63725.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPATGKSRKN"
                     /name="hypothetical protein"
     gene            complement(4439..5392)
                     /locus_tag="VEE55_49250"
     CDS             complement(4439..5392)
                     /locus_tag="VEE55_49250"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63726.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="hypothetical protein"
     gene            5571..5966
                     /locus_tag="VEE55_49260"
     CDS             5571..5966
                     /locus_tag="VEE55_49260"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC63727.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(2696..2776)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(476..2046)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(4443..5392)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgccgtcgtc acagctcccc caaccgcaaa cgattctcgc aaatacgcaa gtatctgcaa
       61 aaacaggttt ttttcggggt tcctgggaga ctgtgctgtt gaaaaatcct tgaagaatac
      121 agaaggctca tgcaaactga atgaactggt ttctgttgtg gatctcaaca gtttccacag
      181 gaacattgag gaggtcagag acctcaatga acccgaaaca gctcgccttc ctggcgagct
      241 gttttcgttc tacgcccgcc gacgaaagat cgcaagtgca ataacgagat ttttcacgtc
      301 tttacgctca aaaagtaaaa aaaccatgtt ttcccctggc tgaatcccca aaaacgcgtg
      361 aaatgcgttt tcaggatgtt gcatagctat gcacaaatac ggcacacgat ttgtttcgct
      421 cgccccagcc gtcgaactgg tcaaaatggc aagatttcgt cacttccccg gtcacatctc
      481 cattgatggc ccactccgaa cccgtgccgc gcgttcctgt acctcatgtc tgtaccgggc
      541 acgctcctgt tcatccctta gctgttgttc gcgataaata accgactcaa gcgatccact
      601 tgcccggcta atctctgcac ctgctgactc aatatcacga cgcgctcgtt cagtatcgcg
      661 ttgttccgtt gcgtaacctc gtgcatcttc tgcaattccg cgaaggcgct ctcccactcg
      721 ttcagccgcc gcatatagtc ctgttgcaaa tgctctaagg cgttcagcaa atgcccttcc
      781 agttccgtca tactcgttta ctccctgacc agcctcacgg cgttcttgtc gcccaccgtc
      841 caggtgtttt cccctttcac cccgtccggc aacaccagaa atttcccgtt ctcgccattg
      901 acgaacgtca ccccccaggt ttttgcctcg agtttcgcca gcgtgttttc ctgctctctg
      961 atagtcagga tatttttcgc aatcttgctt tcctgccact ccatcagccc ccagcacccc
     1021 aggaaaatgc cgcccgtgac gctgagcgcg gtcagcgccg gaaacagtat ccgccctttg
     1081 atcacccgcc agagcagttt tttctgctgc cgggacagtt cggcctctgt ggtgctgaac
     1141 tgcatgctca cggtggtgct cagcgtatcc agttgctttt tcacggatgt tgtatgttcg
     1201 ctgatagcgt ctctgatttt ctgcctgttt aagctcaatg ccttgtctac agactcttcg
     1261 agcttcctga actcgctgtt cagcatgttc tcggtagaag cggctcgctc tttcagtttc
     1321 ttctcgaagt ctgttcccat ttgtaaaaga ttgctcatac agcgccccct ttagcctgag
     1381 attccgcccc ccctccgggt cggcaatact gatgctgctt ttggttgtcc tcaccacctc
     1441 aaaacctgcc gctgtaagcg cctctgtgac atcctgacgc gtttttattg ctccggcatg
     1501 gtaaagagcc tcaagacccc gtgtaatcgc ttctgcggcc tcctgtttcg cttttggcag
     1561 attatttggc gtgacaagcg tccgtctgtt ctccggtgcg ttcgggtcac gcagcccgta
     1621 atgatgatta accagcgtct gccaggcatt tatcctcggc ctgtccgcgc ggtcgtagta
     1681 cggctggagg cgcttaccgc tctgtagctc catgttcggg atgacaaaat tcagttcgag
     1741 ccgcccctta tcctggtgtt ccacccagag aatgctgtac tggtcttttt cgagaccggg
     1801 cataagaaca cgctcaaagc tcgtcatcac tctttcgcgt tcacccggcg gtaactcctt
     1861 ctccgcgaac gacagaacgc ctgaagtgta tttcttcgag aatggcgtgg aatcaatgag
     1921 ttcccgcact tcttccgggt taccccggag caccgttgcg ccttcgcggt tacgctcccg
     1981 ccccagcagg taatcgaccg ggccacttcc accgcctttc cccctggcat gaaatttaac
     2041 tatcatcccg taccccctgt tccctgacag cctgccgcaa ctggcgcaat tcaccctcga
     2101 tggccatcag tgcggccacc acatgaaccc ggtcaatcga agaccactgg ccgctgttca
     2161 ccttccgggc tgtctggttc aggttgttcc cgatggcagc cagatgccgc agcaatggcg
     2221 gcgatagtgt cggcagtttt cctgtgcgtg caaccggctc ccccagacag acccgccgca
     2281 tccattccgc cagtcgttta ccctcgcagc gttccagtaa ccgggcgtgc tcctcatcgg
     2341 taacccgtat cgtgagcatc ttctcgcgtt tcatcggtat cattccccct aacaaatccc
     2401 ccatacaagg agccttaaga ccatgaccaa acaggaaaaa acagccctta acatggctcg
     2461 ctttatcaga agccagacgc taaccctgct ggaaaaactc aacgatctgg acgcggacga
     2521 acaggcagac atctgcgaat cacttcacga ccacgccgac gaactctacc gcagttgcct
     2581 cgcacgcttc ggcgatgacg gtgaaagcaa ctgaaacatg cagctcccgg agacgttcac
     2641 agcttgcctg tgagcggatg ccgggagcag acaagcccgc cagggcgcgt cagtgcgggt
     2701 gtcggggcgc agccctgacc cagttcacag agcgatagcg atgtgtatac tggcttatct
     2761 cattttgcat cggtgcagaa tggatgggaa gtgcaccatg tcaggagtaa aaagccgcac
     2821 agatgtaaaa acagcgcacc cgataaacag cacacacgcg gacactggca caggcgcgta
     2881 agtgcacaat gcttgcatct gtgactcttc cgcttcctcg cccactcgct cactacgttc
     2941 ggtcgctggg gctgcggcga gcggtgggat cactctcgtt gtgatgcaga tccgtttttt
     3001 tttttgcact ggagttatca ggagttgcgg tgcacatggg atcgtgcgat atgccggatg
     3061 gtgaaaggtt ggagggaacg gcaacaactc acccctccca gtgaagggac gggtagtttg
     3121 ccgctctcga tatgccggac ggagccaagg ccatcgatca cggggcgcgt cagtggaaga
     3181 acccgcgcct gcgtgacgta tgcgtcttcg ccgcaccatc tcacccgtca cgccaccaca
     3241 taccgggaac tgccgccaag gtctaactca accaatctag ccgcgctaca tacggttttt
     3301 gtggcaactc atcaggtgtc cgctgtcgat gaaactctct gcgccggtag cggaactctc
     3361 acgcgtgcgg ttgccgtcgt cacagctccc ccaaccgcaa acggtctttg caaacacgca
     3421 atcatctgca aaaacaggat tttttcggga ttctggggag gctgtgcggt cggtaatgct
     3481 tgaagaatac agaaggttca tgcaaactga atgaactggt ttccgttgtc gccgcaacag
     3541 actccacagg aacattgagg aggtcgaaaa cctcaatgaa cccgaagaag ctcgcctaac
     3601 ggcgggcttt tttcgttcta cgctccctga cgaaagatcg caagcacaat aacgcgattt
     3661 ttcacgcttt tacgctcaaa acatcaaaaa accatgcttt cccccacccc tacctcaaaa
     3721 aacgcgtcag aaacgtttcc aggggcttgc ataactattc acaaaagtga ttcggaatca
     3781 atttcgccaa atctgagcac cgaacgggtc aaaacggcaa actttctcat cagaaaacgg
     3841 tgaacgggac gcggaatttt ttcgcgtccc gtgaggcgtt ggacaagcga agcgcgtcag
     3901 tttttccggc tcttccctgt tgctggtttg tccagtttct tttcaatatc aacaattttc
     3961 tgatacacga cctccgtcgc ggtgtagttc ctgtcgatca acgttttggt aaaccagcca
     4021 agcaacgaga acatgaccag aaaactgacc gtaacaccga taaaccattt cagactgtat
     4081 ttattgagcg tgttgtattc tttaacaaca ttgtgatgaa ttgtcgcaat gtccttgtta
     4141 agcgcctccg cgttggctct catctttgcc acagtctctt caagacgctg aaaatcctgg
     4201 gtcatgcgct cacccatcag ccccgcaatg tccgttttct gtaccccttt tctgacttca
     4261 tcgctaacct gttttacaac actgtcagaa atatcccgat acccccgcag tgtttccctt
     4321 gcgaccgcca gcgtgtctgc aaccgctttc tgttgttcta tcgcagtgtt tttcaaatgc
     4381 tcaacggaca acaagagcgt gagcaacccc tcttctgtac tcgccataca gtcccctttt
     4441 aacgttcgta gtcgtacccg cgtgagttgt cacgaatgcc catgccgtgc cctcgcgtgt
     4501 tactccgcgt ccgcgttggc gcacgttcaa attcaacttc acctgtttta tttattcttg
     4561 ccgtaagcgc gtgccctcgc tcccgtgcga cgtcctgtaa aagcgtttta actaactctt
     4621 tttgctgaac ttgtgcatca aattgatggc gaaccgaatg cgctttctct agaaaatgtt
     4681 cgagcggctg cgctcggttt tgcaggattt cgcggcgctg cgcatgatca agccgtgatg
     4741 aggcggcaaa tccgaaatgc cgttctggcg tgcgtttaat tccgcgttct tccagtgagc
     4801 gatggtcaac gcgcaccctg tgaccatgac gcgctaaatg ctcgttctgt aacgctgacc
     4861 agctcgcccg taacgtccgc aattgctctt tttgctgagt cggtgtcaga ttgcctgaat
     4921 ctttttttgc gcctccccgt tcgggattct tggcgttata acgccggaaa tactgttccg
     4981 gcgaacgttc cataccatcg ttaatacgct ggctcatcat gatatgcgca tgaggctgtt
     5041 cccctccgtc aatgctcgct tttggattgt gaatggcaaa gctataggcg tgccgttctc
     5101 cagctacctg acgcacaaaa tcctgcacca gttcaatgcg ctgatccggt gtcagttcac
     5161 gcggcaaggc gatttcgatc tcccgataag tcgaaccatt cgcacgttca aactgatcag
     5221 ccgcttgcca gaaatgggag ggattatctc gcgcccagcc tggcatattc ccgtgctctg
     5281 agtattccag atcttttcgt ttctcgtact cgcctttgcg ttcgatgtaa tcggcatggt
     5341 ttccggcctg tcccttgccg ccaaatttta cattgaggtg ataggttgcc acggtgttag
     5401 ccctccgcag gagcgcacat gtttctgagc caacggcgaa gaaacatata agtgcgcttc
     5461 cttctaattt tacgaattag cacggaagat accccctgca cccaccgacc gcaagcgata
     5521 tactgcacaa ccccaacaca ccgcaaaaaa caccagggag catcccaaac atgcgcatca
     5581 gcaacatcga ctggttgaag aaacgaatcg gctttatcag gaagctcgga gaacagaccg
     5641 cacgacagag gcagatcatt gacctgctcg ataacgaagc cggactaaca gaacaggagc
     5701 gcaaactact ccacgtcctg gcaaccgcag aaaaaaacga gctacaggca caggagaacg
     5761 cacgcaaaca ggccaaccaa aaacggatgg aggggaaaac acaacgacgg gaacgcaatc
     5821 accgcctgtt tcttgcggcg gggttactga tcgaggccgg actagtggac acaaaaacag
     5881 gcgaactgag atacccaaaa gacaatatat tacagaaact taaggcaatc aggctcgatc
     5941 ttgaaacaag cccagatcat cattaattcc gctgcgtggt ggtgcgtttg cctgccggtg
     6001 ttcaatgttt tcgatttcgc gacgcgctac gcgcggatct ggcataggtg cgtacgtgct
     6061 caatgtggtt tccggttcac ttccgcttcc tcgcccactc gctcactacg ttcggtcgct
     6121 ggggctgcgg cgagcggtgg gatcactctc acatgatgca gatccttttt tttttgctct
     6181 ggagttatca gttgttgcgg tgctcatggg atcgtgcgat atgctggatg gtggaaggtc
     6241 ggagggaacg gcaacaactc acccctccca gtgaagggac gggtagtttg ccgctctcga
     6301 tatgccggac ggagccaagg ccatcgatca cggggcgcgt cggtggaaga acccgcgcct
     6361 gcgtgacgta tgcgtcttcg ccgcaccatc tcacccgtca cgccaccaca taccgggaac
     6421 tgccgccaag gtctaactca accaatctag ccgcgctaca tacggttttt gtggcaactc
     6481 atcaggtgtc cgctgtcgat gaaactctct gcgccggtag cggaactctc acgcgtgcgg
     6541 t
//
