LOCUS       AP027772                3203 bp    DNA     circular BCT 03-NOV-2023
DEFINITION  Escherichia coli 2017.03.02CC plasmid p2017.03.02CC_3 DNA, complete
            sequence.
ACCESSION   AP027772
VERSION     AP027772.1
DBLINK      BioProject: PRJDB14867
            BioSample: SAMD00562588
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hoang,H.T.T., Yamamoto,M., Calvopina,M., Bastidas-Caldes,C.,
            Khong,D.T., Nguyen,T.N. and Yamamoto,Y.
  TITLE     Comparative genome analysis of colistin-resistant Escherichia coli
            strains possessing mcr isolated in Ecuador and Vietnam
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3203)
  AUTHORS   Yamamoto,Y. and Hoang,H.T.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2023) Contact:Yoshimasa Yamamoto The United
            Graduate School of Drug Discovery and Medical Information Sciences,
            Gifu University; Yanagido 1-1, Gifu 501-1194, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.8
            Genome Coverage       :: 131x
            Sequencing Technology :: MGI DNBSEQ-G400RS; ONT MinION Mk1c
            ##Genome-Assembly-Data-END##
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2017.03.02CC"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2017.03.02CC_3"
                     /geo_loc_name="Viet Nam:Thai Binh"
                     /collection_date="2017"
     gene            371..562
                     /gene="rop"
                     /locus_tag="VEE52_48200"
     CDS             371..562
                     /gene="rop"
                     /locus_tag="VEE52_48200"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002213433.1"
                     /codon_start=1
                     /transl_table=11
                     /product="rop protein"
                     /protein_id="BEC44497.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="rop"
     gene            complement(1794..2057)
                     /locus_tag="VEE52_48210"
     CDS             complement(1794..2057)
                     /locus_tag="VEE52_48210"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BEC44498.1"
                     /translation="MIIKYLTIPAPPKYLITAYDEIAIERPFLIVFDIRSTPLRNDTEI
                     TKERGTTIIPDKESEALNTYNSCIIETMNINMNASLVNKLTK"
                     /name="hypothetical protein"
     Typing          complement(58..496)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.433"
                     /coverage="89.0"
                     /evalue="7.500000000000001e-132"
     Typing          2938..3192
                     /name="rep_cluster_2392"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.549"
                     /coverage="100.0"
                     /evalue="3.09e-77"
ORIGIN
        1 gcgccacgct tcccgaaggg agaaaggcgg acaggtatct ggtaagcggc agggtcggaa
       61 caggagagcg cacgagggag cgaccagggg gaaacgcctg gtatctttat agtcctgtcg
      121 ggtttcgcca ccactgattt gagcgtcaga ttctgtgatg cttgtcaggg gggcggagcc
      181 tatggaaaaa cgccccggcg gggcgtggcc ttttcgccct tgtccttagc tttcgttatg
      241 cttaccgtta cgttatctgc ttatcctccc tccgctcgcc gcagactcat gaccgaacgg
      301 agtgagcgaa tgagcgagga agcggaaaac catcagaacg tacaataagc actttcgcgc
      361 cggggctttc atgaacaaac aacaaaagac tgccgttaac atggctaaat tcatccagga
      421 tcagtccctg cttcttctgg acaggcttaa tgagctggat ctggatcatg aggctgattt
      481 ctgcgagaaa ctccatgagg atgcggaacg cctttaccga agcctgtcag cgcgcctgaa
      541 tgagcagcag gacggtgcgt aatggctccg ttctgggtat taccggagta ataccggcat
      601 cgccttaatt ttcattgtgt tagcgcttaa cattattacc ccggtaatac ccagaatccc
      661 tgtgtttttt attttttatt tacttttcat gaagttgcga tgaaaatcgc agctgcgtta
      721 ggtgtatgtc attttttagt atataaaacg accactcccg agtgctggcg ccgcaggtta
      781 agtatgattc tggctaaaaa gcgtcctttt ccgggaaagg gtcatgctcg tatgacccta
      841 tgggttcagc gactacacat aaactacaaa attgcatctg cttttacccc agaacgcggg
      901 tgtacaacag aattacatca aaagtacatc acttttacat catttttacg tcagatctga
      961 cctctgagct attcgtacat ccgccccctc ttcctgggcc tcctgcacgt gctgaaaatg
     1021 gtttttccgg ctgtgccggc aacgcctcac ggccacgcaa taaattgcgt ccccgttcac
     1081 cgttttcggg taagaagaac atcggaaaca ggacttaccc cggctgaatg gcgtgaattt
     1141 ccgcgctatg cacttgtgcg catactcatg catgccgtaa aaacagagcc tgcgcgtttc
     1201 tggcgggttt tcgggtggtt tgttgcctgt tttaccggtt tcccgtcaga aacgcgctca
     1261 ggccgtctga gcggtgcgcg taatgtggtg ttatggtaaa taaaagtatt gcatatctga
     1321 atttgtagaa agtacgtgag aaataatcac ctctggcttg gtttcggtaa aacttctatt
     1381 tttttttcta atgtgttatc ttttgcaagg ttctttagtt aagtttcaaa gagtgagttt
     1441 ttttaattga ttgggttgct tgttttttat taagcttgca atgtggaaat tacatgggtt
     1501 tattttaaat attaaaagtg cacataaatg atctatgctt ttgctggttt ttttacaggt
     1561 ttttatggct tatctgtgtt ttgtgttttt ataatcgctg ttttatgtag agagtttcga
     1621 ttaccaaatt ttgctttgct ttgttctatt ttcattataa tagtactatc ttttttatat
     1681 ggattcagaa gtattgattc agggactgat actgtaacat atcatgtgtg gtttgactct
     1741 ataagtaagg ggtctacaaa tagagagttt gagccatttt ttgttttatt tggtcatttt
     1801 gttaacttat ttactaatga tgcattcata tttatattca ttgtttcaat aatacagctg
     1861 ttatatgtat tcaaggcttc gctctccttg tcagggatta ttgttgttcc tctttcttta
     1921 gtaatttcag tgtcatttct tagtggtgtc gatctaatat cgaacactat aaggaatggt
     1981 ctttctattg cgatttcatc atatgcagta attagatact taggtggcgc tgggattgtt
     2041 aaatatttaa ttatcattat gatttcatct atgatgcact cgtcgtgtat tatatttatg
     2101 ataattccag tggtcaggcg gtttttaaat gaaaagtatg cgcttcgcgt tttttataca
     2161 tatgtgttta tatatctcct gagttttctg aatgtttttg aatttctttt ctattctttg
     2221 aataatattg gtgttggtgc tttacacgta gtagatagga ttatcgcatt caaggttcaa
     2281 gatattgata tgcttggtgg tagtatgaaa tactatttct ttgttatcac gttaatacca
     2341 tttctactta taaagttcgg tttttatgta aataaacaac tttttaccat tcattatgtt
     2401 cttttaattc catatgcgat tattttttta tcgccatctt catatcgatt tagttacatt
     2461 tcattttata tatgtgtgtt tattatcgct caagctgttt atgattcaaa atcactttta
     2521 aatcgattgt taatatactt tgcaatattg gcaatgattt tgttaacata cactacgaat
     2581 acaatggtta actataaaca tgttatatat taataaatat atctgacata aatagtttct
     2641 ctgtagctgc atcgaaggca aagcatgcta gtgctggcca ttgaactatg gttaccatgt
     2701 ctttggctaa ctcactatgg ctacacttta gtaccttcgg agtcttttat cgggtttgaa
     2761 gttgtgcctt gggtggccgg ctgcagcatg aattacacct gccaggaaga tgatctactt
     2821 gagatccttc cttttacgtc gtaatctctt tctcggaaaa cgaaaaaacc acctggggag
     2881 gtggtttttc gaaggttcag taagttgggg aacttctgaa ccgtggtaac agtcttgtgc
     2941 gagacatgtc accaaatctg tcctttcagt gtagccgcag tcaggccacc acttcaagaa
     3001 ctctcgatac atctctcgca catcctgtct accagtggcc gttgtcaatg gcgattagtc
     3061 gtgtcttacc gggttggact caagacgata gttaccggat aaggcgcagc ggtcgggctg
     3121 aacggggggt tcgtgcacac agcccagctt ggagcgaacg acctacaccg aactgagata
     3181 ccaacagcgt gagctatgag aaa
//
