LOCUS       AP026745                3788 bp    DNA     circular BCT 06-SEP-2022
DEFINITION  Escherichia coli JNE110611 plasmid pO165_JNE110611_3 O165:H25 DNA,
            complete sequence.
ACCESSION   AP026745
VERSION     AP026745.1
DBLINK      BioProject: PRJDB8147
            BioSample: SAMD00522975
            Sequence Read Archive: DRR401493, DRR401539
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Nakamura,K., Lee,K., Ooka,T., Taniguchi,I., Gotoh,Y., Ogura,Y.,
            Iyoda,S. and Hayashi,T.
  TITLE     Comparative genomic analysis of STEC O165:H25
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3788)
  AUTHORS   Nakamura,K., Taniguchi,I. and Hayashi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2022) Contact:Keiji Nakamura Kyushu University,
            Faculty of Medical Sciences; Higashi-ku Maidashi 3-1-1, Fukuoka,
            Fukuoka 812-8582, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: unicycler v. 0.4.6
            Genome Coverage       :: 66x
            Sequencing Technology :: Illumina MiSeq; Nanopore MinION
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="JNE110611"
                     /serovar="O165:H25"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pO165_JNE110611_3"
                     /geo_loc_name="Japan"
                     /collection_date="2011"
     gene            complement(514..1032)
                     /locus_tag="JNE110611_p3-1"
     CDS             complement(514..1032)
                     /locus_tag="JNE110611_p3-1"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDQ79686.1"
                     /translation="MSEKAKKVGRRSLSKRRERLIKELWGDELSELNIWNRKEHDGFTT
                     IPRTLNYINRIIDYLAGAGSPVSQTYLSLWCRVFDEGFVEIRDKDALAFESGFSGQRAV
                     TTWLGRMKKLRELGLISTKPGTSGEFHYVIMLNPLYVIKKSYESNGWKRDERYNALFSR
                     MQEVGAEWE"
                     /name="hypothetical protein"
     gene            complement(1379..1540)
                     /locus_tag="JNE110611_p3-2"
     CDS             complement(1379..1540)
                     /locus_tag="JNE110611_p3-2"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDQ79687.1"
                     /translation="MDRETLYLLKTLDHNNALLDDIIRRKMGRYYNTKILRDSCGAIEA
                     ELRRRGII"
                     /name="hypothetical protein"
     gene            complement(2429..2578)
                     /locus_tag="JNE110611_p3-3"
     CDS             complement(2429..2578)
                     /locus_tag="JNE110611_p3-3"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /inference="similar to AA sequence:INSD:ABV16377.1"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDQ79688.1"
                     /translation="MPSEHDEQRDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            3580..3732
                     /locus_tag="JNE110611_p3-4"
     CDS             3580..3732
                     /locus_tag="JNE110611_p3-4"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDQ79689.1"
                     /translation="MLAHAVELKKATEPCSSGTAGAFRQRVKARRAEQGRSNQQPEKLY
                     GVLVG"
                     /name="hypothetical protein"
     Typing          complement(2572..2786)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.52"
                     /coverage="100.0"
                     /evalue="3.460000000000001e-56"
     Typing          2750..3247
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.258"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 caaacaagtt gtcctcgcta aatccataat catttatagc tatctctctg actttgctat
       61 ttggctcata gatggctgag tattcgcttc ccatcgcatt cgcgacagta acaacatacg
      121 taacagaaat atccagtgca tatcctgaaa gagccgtgtc ataaggggct gattcaaggt
      181 aatgcagctt agttaccact ttactatcag aaaccccgcc accaatcaga gcgcatagct
      241 tgccttctga tttaatggca cagacgaatg cgctagggtt cttcaaatag ccgttataga
      301 gcttaaccca gtcccatcca ccgttaggtg gtaatcttgc aacaccgtta ggatcaacag
      361 ccccaatcca tctctttgac atttccacgt cacttaaaga tgcgatttct aaactccaat
      421 ccaaacttct aagttcatca aacgccccca ctacttctga cgcagcaaaa tcatatctct
      481 gcttatatcg gtgacgaaca gctttcatgt cgttcattcc cactccgccc ccacttcctg
      541 catcctagaa aatagagcgt tgtaacgctc atctcttttc catccatttg attcatatga
      601 ctttttaatt acgtaaagtg gattcaacat gattacataa tgaaactcgc cagaagtacc
      661 aggcttcgtt gatatcagtc ccagctcccg tagctttttc attcttccta gccaagtagt
      721 caccgctcgc tgcccactaa accctgactc aaatgccaga gcatctttat ccctaatttc
      781 gacgaatccc tcgtcaaaaa ctcgacacca taaactgagg tatgtctgtg acacaggaga
      841 tccagcgcca gcaaggtaat cgattatcct attgatataa ttcaatgttc ttgggattgt
      901 tgtaaatcca tcgtgttctt tcctgttcca tatattcagt tcggaaagct catcccccca
      961 aagctctttt attagtcttt ctcttctttt tgatagagag cgcctaccta ctttttttgc
     1021 cttctctgac atttatcccc caaaagtcaa ttcaacatga aaatattatc aacaaaaaac
     1081 ctattatatt caatgagtta tgtgtaataa cacaaaaacc aagcacatca ttaaccaaca
     1141 tctcatttga tatgattctt tttttttgtc aacacaaata ttgagatgta atattattta
     1201 cggttacggt attatttttc aattagttat gcgttatttt gtactcgctg ttctcaatgt
     1261 actctaatgt aatcgttgtg ctcgctgtgc tgaatggggt tcttaggggg tttaaggggg
     1321 gaggaagggg tgccatgaat gcgcaatgaa aaagcccaca taagcgggct tcgtcttttt
     1381 aaatgattcc tcgacgtcgt agttcggctt caatagcacc acaggaatca cgcaaaatct
     1441 tcgtgttgta gtacctaccc atctttcttc ggataatatc gtcaagcaag gcattgttat
     1501 ggtctaacgt tttgagtagg tatagggttt ctctatccat cttaggatct ccattttttg
     1561 ttgatgagct tattgctcgc cagtatttat tccgtctgca aattacctac tcagaatggc
     1621 gtcaaaactc gagttttcgc ttacacctca gaaaccattt accataacat ctcttgcgtg
     1681 caccgcctga gaggccctca gggcgtttct gacgggaaac cggtaaaaca ggcaacaaac
     1741 cacccgaaaa cccgccagaa acgcgcaggc tctgttttta cggcatgcat gagtatgcgc
     1801 gcaagtgcat agcgcggaaa ttcacgccat tcagccgggg taagtcctgt ttccgatgtt
     1861 cttcttaccc gaaaacggtg aacggggacg caatttattg cgtggccgtg aggcgttgcc
     1921 ggcacagccg gaaaacccgt tttcagcacg ttcaggaagg gggccgatgt acgaatggtt
     1981 cagggaacgg atctgaggta atccggtagt tactttgtag tttatctgta gttttcttgt
     2041 agtctattag tagtccgcca cggtttttgt agtttttttg tagtctgcca tcactaatgc
     2101 aaaacgtttt ttgtagttta tctgtagttt ttggttgctc agatggtcat gcttgcatga
     2161 ccatcaaaga ataggacgct ttttagccaa atacccctta acctacggag agcgccctac
     2221 caaaaaagat gattttttat cccttaaatg gtcatacacc atacgcaacc gcgattttca
     2281 tcgcaattgc atgaattaaa aggtaaaaac tgaatttccc gtttatttat gtaatacgca
     2341 acgtattaca accacctgta atcacatgaa aataaagaaa taagatgtaa taccggcgta
     2401 ttacacgtac gctgaccagc gaaaaaagtt ataacgcttc cctgccgaca ggcgggccaa
     2461 aatccaccgg ggcgtgcagg ttctcttcag taacctgcgc cattaaatca aaaaggtcat
     2521 attcgccggg aagctgcgta tcagtcgaat cccgttgttc atcatgttca gatggcatgg
     2581 ggtgatatcc agtagctgaa aggttgttag cgggtttcgg ggcgaagccc tgaaccagtc
     2641 acgtagcgct agcggagtgt atacgggctt aaaatgctac aacgcagtaa taatttacga
     2701 aagtgcttca tgtggtaccg ggaaatgcag caccggtgtg taagtgcgaa atgcagatcc
     2761 cggtgaaatg acgcctcctc gctcactcgg tcgctgcgct cctgccgtga gactgcggcg
     2821 ggcgttgcca gctcacgaat ggctggataa agagacttag cggaaatcag gaagagcgga
     2881 aaaaggatgc ggcgttgccg tttttccata ggctccgccc ccctgacaag catcacaaaa
     2941 tctgacgctc aaatcagtgg cggcgaaacc cgacaggact ataaagatcc caggcgtttc
     3001 cccctggtag ctccctcgtg cgctctcctg ttcctgcctt tcggtttacc ggtgtcactc
     3061 cgctgttatg gccgcggttt ctcattccac gcctgacact cagttccggg taggcagttc
     3121 gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgactgctgc gccttatccg
     3181 gtaactatca tcttgagtcc aacccggaaa gacatgcaaa agcgccactg gcagcagcca
     3241 acggtaagag gatgtacaag agattactaa cgcagagttc ttgaagtatc agcccaacta
     3301 cggctaaact ggaaggacga atttggtggc agtggtcttg tacaccctgt taccacggtt
     3361 cataaacttg ccggtttaat gaaccttcga aaaaccacct tgccgggtgg ttttttcgtt
     3421 ttcaaagaag atacgcgttt actcttcgcc tcgtcaatga agggtcgcat taattctgcg
     3481 acttgcgcat ctcttctaca atacagtaca gttactatga agttgacgta tccgtcatct
     3541 catatgcttt gtactaactc acgaaaaaac ggaaataata tgttagctca cgcggtcgaa
     3601 cttaaaaaag cgacggaacc atgctcttct ggtacagccg gagcatttcg ccagcgcgta
     3661 aaagcaagac gagcagagca aggccgatca aaccaacagc cagaaaaact ctacggcgta
     3721 ctggtaggat aaatgagccg gttaaatccg gctcattggt agatacagag cgaaatcttt
     3781 acttgtcc
//
