LOCUS       AP026600                2177 bp    DNA     circular BCT 11-AUG-2022
DEFINITION  Enterococcus faecium JHP38 plasmid pJHP38_6 DNA, complete sequence.
ACCESSION   AP026600
VERSION     AP026600.1
DBLINK      BioProject: PRJDB13429
            BioSample: SAMD00466806
KEYWORDS    .
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1
  AUTHORS   Hashimoto,Y., Suzuki,M. and Tomita,H.
  TITLE     Analysis of enterococcal linear plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Hashimoto,Y. and Tomita,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2022) Contact:Yusuke Hashimoto Gunma University,
            Bacteriology Graduate School of Medicine; 3-39-22, Showa, Maebashi,
            Gunma 371-0804, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Canu v. 2.1.1
            Genome Coverage       :: 50x
            Sequencing Technology :: Illumina miniseq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="JHP38"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /plasmid="pJHP38_6"
                     /geo_loc_name="Japan"
                     /collection_date="2002"
     gene            complement(598..810)
                     /locus_tag="EfmJHP38_34400"
     CDS             complement(598..810)
                     /locus_tag="EfmJHP38_34400"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDP62502.1"
                     /translation="MTAMSQLGKCYSLSKSNRKVYTLFIGDSAKEGFNLGFSISFKKGT
                     KNTSISHNNRELTDSQKINGLSGRK"
                     /name="hypothetical protein"
     gene            complement(1037..1198)
                     /locus_tag="EfmJHP38_34410"
     CDS             complement(1037..1198)
                     /locus_tag="EfmJHP38_34410"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDP62503.1"
                     /translation="MQQERKNANESANADLDKTVAQRDLAFYNKFRDIPVSLFGVIRGK
                     ELPLTLEN"
                     /name="hypothetical protein"
     gene            complement(1260..2156)
                     /locus_tag="EfmJHP38_34420"
     CDS             complement(1260..2156)
                     /locus_tag="EfmJHP38_34420"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_011117535.1"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="BDP62504.1"
                     /translation="MQTLTTPLKIQWSIDRITIVGKLKENIYYHTQNDVLILDFEQLMR
                     LNENNGYVKSVGLNGWQIVDKHDENIAYIEILKYQEGQGRIDFNPNKISQFLAGSMKNF
                     IHDLFLEPHFSRADIACDIIDVPDDFITQYRVVDPVSFKPIYGRSGKLETAYWGSRASE
                     RQIRMYNKKLEQETKRKIVPPEIKTWWRLELQLRRGKATDWYAMVHESLDSFASPHFLP
                     TDTKHTDRIMIAGLISDQNLWAGLARHTKYKYRNLLKKESQSDELVNHLRETFSESADV
                     LKKELDTWLLGLDVTEE"
                     /name="replication initiation protein"
     Typing          complement(1264..2147)
                     /name="rep_cluster_943"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.588"
                     /coverage="98.0"
                     /evalue="0.0"
ORIGIN
        1 cactcattta tgatcgtgcc ttttttactc aaatttagtt cctcctcaaa gaaaaaagag
       61 acttctggaa agaattttca aaagttcacg taactcttaa aaattcatta ccaaaaaatc
      121 tctagtcttg aagaaaccta aaaatattcg tataatgatt aagaagttac ggagctagtg
      181 tgattagttt ccgtaaaggt cgagagtgcg tcaacactgc tcgacttatt tttttatttc
      241 tttttctcat tttctttgat tatagcactc ctctagaaaa aataaaaaga cctcagggaa
      301 tttcattccc cgaacccctt gagcctcctc ctgccgaaat agaatggcgc tgccagcatt
      361 tatttcgttc agctatcggc tacacaatct aacacgaccg ttccgctacc agtcgcctta
      421 caggctccat tttcgctcct ctaacgtgtt tcaccgattg tgccgataac taaacgaaat
      481 aaacgctaaa accgctcaga acgcaaaata tgccatttta gagctattgt agaaaatgta
      541 gtttgaaatg caattttctt ctttcagctt tttatttccc acttgtaaat ctgctaatta
      601 ttttctacca gacaaaccat tgattttttg gctatcagtt aactcacgat tattatgaga
      661 aatgcttgta ttttttgttc cctttttgaa cgaaatacta aaccccaagt taaacccctc
      721 cttcgcgctg tcgccaataa aaagagtgta aacctttctg ttactctttg acaaagagta
      781 acattttcct aattgtgaca tggctgtcac aattccaaat gctctccgag ggtattcgct
      841 gtcacaagtg acaacgaaaa aaggagccga aagcgtgtca cgctctcaac tccttttacg
      901 ctttattttg cttcacgcaa aataatcgct tatcttaaac attgacgtaa atttactctc
      961 acttatctga cttttttact cggtatcact ccgagtaagc cgtcatattc attgggataa
     1021 tctcgtctgc ttcgctctaa ttttccagag tgaggggtaa ctccttcccc cgaattaccc
     1081 caaagagtga cactgggata tccctaaatt tattataaaa agccaagtct ctttgcgcaa
     1141 ctgttttatc caagtcggca tttgcggatt cgttagcgtt ttttcgctct tgctgcaaac
     1201 gcacgaccca ccatgccgac ttgtgctgaa aataaaaaag tggacaaaaa ttcatccact
     1261 cattcttccg tcacgtccaa ccccaaaagc cacgtatcca attctttttt caaaacatct
     1321 gccgattccg aaaatgtctc tcgtaaatga ttaactaact catcactttg gctttctttt
     1381 ttcaacaaat ttcgatattt atattttgta tgacgagcca agccagccca taaattttga
     1441 tctgaaatca atcctgcaat cataattcta tcagtatgct ttgtatcagt cggcaaaaaa
     1501 tgaggacttg cgaaactgtc taaactttca tgaaccatcg cataccaatc agtagctttt
     1561 ccacgccgta actgcaattc cagtcgccac caagttttta tttccggtgg tacaattttc
     1621 cgtttggttt cttgttccaa ttttttgttg tacatcctta tttgtcgctc actggcacga
     1681 ctaccccaat atgccgtttc cagcttccca gaccgcccat agattggttt gaatgaaaca
     1741 gggtcaacca cacgatattg cgtaataaaa tcatcaggca catcgataat gtcgcaagca
     1801 atatcagcac gtgagaaatg tggttctaaa aataaatcat ggataaagtt cttcatcgaa
     1861 cccgccaaaa attggctaat tttatttggg ttaaagtcaa ttcgcccttg cccttcttga
     1921 tatttcaaaa tttcaatgta agcaatattc tcatcatgct tatccacaat ttgccaacca
     1981 tttagaccaa cagatttaac ataaccatta ttttcattca gtcgcattaa ctgttcaaag
     2041 tctaaaatca atacatcatt ttgcgtgtga taataaatat tctctttgag ttttccaaca
     2101 atggtaattc ggtcaattga ccactgtatt ttaagggggg tggtcaaagt ttgcacactt
     2161 aaccgcctgt tagaggg
//
