LOCUS       AP026599                2939 bp    DNA     circular BCT 11-AUG-2022
DEFINITION  Enterococcus faecium JHP38 plasmid pJHP38_5 DNA, complete sequence.
ACCESSION   AP026599
VERSION     AP026599.1
DBLINK      BioProject: PRJDB13429
            BioSample: SAMD00466806
KEYWORDS    .
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1
  AUTHORS   Hashimoto,Y., Suzuki,M. and Tomita,H.
  TITLE     Analysis of enterococcal linear plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2939)
  AUTHORS   Hashimoto,Y. and Tomita,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2022) Contact:Yusuke Hashimoto Gunma University,
            Bacteriology Graduate School of Medicine; 3-39-22, Showa, Maebashi,
            Gunma 371-0804, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Canu v. 2.1.1
            Genome Coverage       :: 50x
            Sequencing Technology :: Illumina miniseq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="JHP38"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /plasmid="pJHP38_5"
                     /geo_loc_name="Japan"
                     /collection_date="2002"
     gene            complement(322..738)
                     /locus_tag="EfmJHP38_34360"
     CDS             complement(322..738)
                     /locus_tag="EfmJHP38_34360"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002390085.1"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDP62498.1"
                     /translation="MRKTSVQKHVTLYPSHVDVLDSIIERNPDINNYSEAIRFLCMSYE
                     PDTNTTTTSNQAKLNAMGKEISIMSEIIAEFADLYLKDTGILIGTNSKVYQETKEKIEK
                     QLNPSKRNQPKNRQKETNQTFTSKNFDPTNFLKR"
                     /name="hypothetical protein"
     gene            complement(740..1021)
                     /locus_tag="EfmJHP38_34370"
     CDS             complement(740..1021)
                     /locus_tag="EfmJHP38_34370"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002390111.1"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDP62499.1"
                     /translation="MDILVRKIDSKVIAKIDKRCQELTNKTGKKWSRNRYLKVLIENDF
                     DHALMHYKKDQFDLLLEKFIAIQEKNTETLNEYVRTNNQLIETLIGGR"
                     /name="hypothetical protein"
     gene            1821..2795
                     /locus_tag="EfmJHP38_34380"
     CDS             1821..2795
                     /locus_tag="EfmJHP38_34380"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_011117535.1"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="BDP62500.1"
                     /translation="MSKRGTIINEWEKLNRISNRRLNAQTMCTPLKMQWSIDRITIVGT
                     LRENIYYHTPHDVLILDFEQLMRLNEGNGYLKAVGNNGWQLLDQHEENIAYIEILKFQE
                     GKGRIDFNPNKISQFLAGSMKNFIHDLFLEPHFSRADIACDIIDVPDDFITQYRVVDPV
                     SFKPIYGRSGKLETAYWGSRASERQIRMYNKKLEQERKRKVVPKEIDTWWRLELQLRRG
                     KATDWHAMVHESLDSFASPHYLPEDVKVTDRMMITALITEHSYWGQIHRNSKYKYRELL
                     KQESQNDELTNHLRETFSESADDLKRELDTWLQGLDVTEVGAE"
                     /name="replication initiation protein"
     gene            2792..2932
                     /locus_tag="EfmJHP38_34390"
     CDS             2792..2932
                     /locus_tag="EfmJHP38_34390"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BDP62501.1"
                     /translation="MSDSIEKMTLKKLADELGVSKNTVRNQLVNSGFDLAQYKEKNAVV
                     N"
                     /name="hypothetical protein"
     Typing          1846..2792
                     /name="rep_cluster_943"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.899"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cgaaatttat gtctttgggt tttggggttt taaaacgaaa aaaagggggc gattttcgcc
       61 tttgctctat gtgaaaaatt tgttatactt attttatcct taaaacatac caatcttttt
      121 cttatttagc tgctcgtacg agcagctttt tttacgatta tgaattcaaa tcatgtattt
      181 ataatttttt tgtttttatc tttttttctg ttatttcttc tgaaattcgt ttttttttca
      241 ttcaatattg taaatgttgc tattaagatg gtgatcctac ccaaaaaata aaccaggaat
      301 ttaaatctcc tggtttattt tttatctttt tagaaaattt gttgggtcga aatttttaga
      361 agtaaatgtt tgattggttt ctttttgacg attttttggt tgatttcgtt tggagggatt
      421 aagttgtttt tcaatttttt ctttcgtttc ttgatacact ttagaatttg tgccaataag
      481 aatacctgta tcttttagat ataaatcagc aaattctgca atgatttcgg acatgatgga
      541 aatttctttt cccatagcat ttagtttggc ttggttgctg gtagtcgtag tattggtatc
      601 aggttcataa ctcatacata aaaaacgaat ggcttccgag taattgttga tatctggatt
      661 tctttcgata atggaatcta aaacgtccac gtgactggga taaagggtaa cgtgtttttg
      721 aacagaagtt tttctcatgt tatcttcctc cgataagtgt ttcaatgagt tggttgtttg
      781 tacgaacata ttcattcagc gtttcagtat ttttttcttg aatagcgata aatttttcga
      841 gtaataaatc gaattgatct ttcttgtaat gcataagtgc gtggtcaaaa tcgttttcga
      901 ttaggacttt taagtagcga tttcgactcc attttttgcc agttttattt gtgagttctt
      961 ggcaacgttt gtctattttt gcaataacct ttgaatcgat cttccgaact aaaatgtcca
     1021 tagaaaaact cctttcgcat ttgtgtataa tttatgtata tcatacgaat atagtatttg
     1081 tatagctgtt ttttgctaaa atactataca taagctagcc acgatggcga aaaagtgata
     1141 tcaaattttt ttctgagaaa cgtgataggc acagcctatc tacccacttt ttttagaaag
     1201 tgggtacacg tttccttatg ctctttataa aatggtgatg tgcgactttt ttctgttcgt
     1261 aaaaataaaa aaagtttacg aaaatgaaac taaactgaac gattatgacg ggcatgtaat
     1321 caagatgaaa tgattttata agcgcgtatt ttgcgttcta agacgtttta gcgttcattt
     1381 cgtttagtta tcggcacaat cgttaaaaca cgtaagagaa gcgagaatgg agcctgtaag
     1441 gcgactggta gcgaaacggc gtgttagatt gtgcaagccg agaactgaat gaaatgaaga
     1501 gcggaagcgt gaaataattt cggcaggagg aggctcaagg ggttcgggga atgaaattcc
     1561 ctgaggtctt tttatttttt taagaggagt gctataatca aagaaaacga gaaaaaagag
     1621 caaaataaaa gccgaacggt gttggaagca cccttcggct aattacggaa actactcacc
     1681 tagttccgta actcaaattc attatacgaa tatttttagg tttcttcaag ctagagattt
     1741 ttggatatgg atttttagag ttacgtgaac tctggaaatt ctttccaaaa atctcttttt
     1801 tctttgagga ggaacaaaat ttgagtaaac gtggcacgat cataaatgag tgggaaaaac
     1861 ttaaccgcat atctaacagg cggttaaatg cacaaactat gtgcaccccc ttaaaaatgc
     1921 aatggtcaat tgaccgaatt accattgttg gtacattaag ggaaaatatt tattatcaca
     1981 ctccccatga tgtgttgatt ttagattttg aacagcttat gcgtctaaac gaaggtaacg
     2041 gatatttaaa agcggttgga aataatggct ggcaattact agaccaacat gaggaaaata
     2101 tagcttatat tgagattctt aagtttcaag agggaaaagg gcggattgac tttaacccca
     2161 ataaaattag ccaatttctg gcgggctcga tgaagaactt tatccatgat ttatttttag
     2221 aaccacattt ctcacgtgca gatattgctt gtgacattat tgacgtgcca gatgatttca
     2281 ttacccaata tcgggtggtt gatcctgttt ctttcaaacc aatttacggt cggtctggga
     2341 aactggaaac agcatattgg ggaagtcgtg ctagtgaacg acagattcgg atgtataaca
     2401 aaaaattgga acaagaaaga aaacggaaag ttgttccgaa agaaatcgat acttggtggc
     2461 gactagaatt gcaattgcga agggggaaag caactgattg gcatgcaatg gttcatgaaa
     2521 gtttagatag ctttgcaagt cctcactatt tgccagaaga tgtgaaagta actgacagaa
     2581 tgatgattac tgctcttata acggaacata gttactgggg gcaaattcat agaaattcaa
     2641 aatataaata tcgtgaattg ttaaagcaag aaagtcaaaa tgatgagttg acgaatcatt
     2701 tgcgagaaac attttcggag tcggcagatg atttgaaacg agaattagat acatggcttc
     2761 aaggacttga tgtgacggaa gtaggtgctg aatgagtgat tcgatagaaa aaatgaccct
     2821 aaaaaaactt gctgatgaat tgggtgtatc gaaaaatacg gtgcgcaatc aactggtcaa
     2881 ttcgggattt gaccttgctc agtataaaga aaaaaatgca gtggtcaatt gacattgac
//
