LOCUS       AP024494                2683 bp    DNA     circular BCT 22-FEB-2024
DEFINITION  Providencia vermicola strain N3 plasmid pPRVEN3-4 DNA, complete
            genome.
ACCESSION   AP024494
VERSION     AP024494.1
DBLINK      BioProject: PRJDB11239
            BioSample: SAMD00281820
            Sequence Read Archive: DRR274671, DRR274672
KEYWORDS    .
SOURCE      Providencia vermicola
  ORGANISM  Providencia vermicola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Providencia.
REFERENCE   1
  AUTHORS   Sekizuka,T., Haque,A., Matsumoto,T., Sah,R. and Kuroda,M.
  TITLE     complete genome sequences of blaNDM-1 and blaOXA-181 co-harboring
            pan-drug resistant Providencia vermicola str. N3
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Sekizuka,T., Haque,A., Matsumoto,T., Sah,R. and Kuroda,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2021) Contact:Tsuyoshi Sekizuka National Institute
            of Infectious Diseases, Pathogen Genomics Center; 1-23-1 Toyama,
            Shinjuku-ku, Tokyo 162-8640, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Canu v. 1.4; minimap v. 0.2-r124; racon v. 1.1.0;
            circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v.
            20140604
            Genome Coverage       :: 342x
            Sequencing Technology :: PacBio RS II; NextSeq500
            ##Genome-Assembly-Data-END##
            Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Providencia vermicola"
                     /mol_type="genomic DNA"
                     /strain="N3"
                     /host="Homo sapiens"
                     /db_xref="taxon:333965"
                     /plasmid="pPRVEN3-4"
                     /geo_loc_name="Nepal"
                     /collection_date="2015"
     gene            101..745
                     /gene="qnrD1"
                     /locus_tag="PRVEN3_P4010"
     ARG             102..742
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1383..1823
                     /locus_tag="PRVEN3_P4020"
     CDS             1383..1823
                     /locus_tag="PRVEN3_P4020"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BCT08362.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            2092..2493
                     /locus_tag="PRVEN3_P4030"
     CDS             2092..2493
                     /locus_tag="PRVEN3_P4030"
                     /inference="COORDINATES: ab initio
                     prediction:Prodigal:2.6.3"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BCT08363.1"
                     /translation="MILSVSMPLIFWTKMNDIRLRPLAIFFGWTPAKKTIHPSPSNSLR
                     SSDHPLFSPLYLVAQKCGGQTLRLTGGFAPKTKHVHWGSLAIAGACHFVSAPPVFPFLR
                     WTLIRIKTKSLPPSFYSVGQIASCHKTSL"
                     /name="hypothetical protein"
     Typing          2535..2683
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="96.0"
                     /evalue="1.78e-67"
ORIGIN
        1 aacataaaag ggattgtatg aatcaatttt agctagagtt taaggttgtt caaattaatg
       61 tacaatgatt gcactgtata aataaccagg tgtagcatgt atggaaaagc actttatcaa
      121 tgaaaagttt tcacgagatc aatttacggg gaatagagtt aaaaatattg ccttttcaaa
      181 ttgtgatttt tcaggggttg atttaactga tactgaattt gttgattgta gtttttacga
      241 caggaatagc ttggaagggt gtgattttaa tagagccaaa ctaaaaaacg ctagctttaa
      301 aagctgcgat ttatcaatga gtaattttaa aaacattagc gccttaggtc ttgaaattag
      361 tgagtgttta gctcaaggag ctgattttcg aggggctaat tttatgaata tgataactac
      421 aaggtcatgg ttttgtagtg cttatataac caagacaaat cttagttacg ctaatttttc
      481 tagagtcata ttagaaaagt gcgaactgtg ggaaaatcgc tggaatggca ctgtgataac
      541 tggcgccgtg tttcgtggct ccgatctttc ttgtggggag ttttcatcgt ttgattggtc
      601 tttggctgat tttactggtt gtgatttaac gggtggggcg cttggcgagc ttgatgcaag
      661 gcgaattaat ttagatggag tgaagttgga tggagagcag gcgcttcagc ttgttgagag
      721 tttaggtgtt attgttcacc gataaaatct aggtaaaaaa cgcctaatgc cccaatgtgg
      781 tactaatcaa aacggagcga agcgacatct tcatcttgtc tttgcttttc tccatgatca
      841 gttattgggt catggtctct tagctcgtta atctggctaa gtttggttag gttgggcttc
      901 tttcgacact tcgcaatcca agaaatccct agtccgttga ttggtgctct tatcaggtac
      961 gcactgtaat ctttcgatac cgcagcgtga ttcggaggta gagccggaat ttcgttttcc
     1021 ggtacgtttt actaccacaa tttgcctgtt tatcctttcg gagaccgggc taagtccgag
     1081 tcaatcaagt ggtgcatttg ggttaatgtc gttggctggt atttaatgag aacgtgacaa
     1141 gcgcctctca cgttgctaag attggattgc gacgtctaat ctgagcaacg aatgcacaag
     1201 atttagagta ccagagccct gtgatgctgt cacggggctt tgttacatct ggagcttggt
     1261 aaacctcata aattcaattc gcaacgctcg ccgcaaggcg tgaacttgtt tcacgtcgag
     1321 gaagcggaat ttctcgaaag ccttatactg tctccgttca cacatgatcg gagggtgtct
     1381 ctatgtctca attatttcgt ttggcatcgc cagaagatta cgaatacatc gaagaattaa
     1441 atttatggga attgtcattt gataagcgac cggttcaagg ggttcgttgt gaagatccgg
     1501 tgatcggggc agaaaaatat aatcaagggc gtgaaaaatt taaggcgtta gcgtcacggc
     1561 ataaaaaaca ctggaaaccg aacggattga ccttttcgga gttgatccgc tgggcaatag
     1621 aatgcggaac tccagaacaa tgtcagcttg ttttagcgtt ataccattgc acaaacgatg
     1681 atgattatca ggcgatggga attcagttaa gccgaagtat tgataatgca aatgtcagtc
     1741 cgatcatctt tttcacaggt aaaaatcaac ggttattagg tgatatttcg atgctaaaac
     1801 agctcgaaga aaaggtgcgc tgacgttagg tttacctatt attttatgta ttatcctatc
     1861 tattattcta tctcttattt tatctatttc gtctgtaata ggtagaataa tacatagaat
     1921 aagatacaga ataatagata gacacaagat gacgttgtgt tatttcttac ccattaatcc
     1981 acctgttatt ctacctatta ctttacccgt tattgcaccc aatttaggta taacgggcag
     2041 aataacgggt gaaataatgg gtagaatcat agttttacta acttgcaccc catgatactt
     2101 tcagtatcaa tgccactcat tttctggacg aaaatgaatg acataaggct ccgccctctg
     2161 gctattttct tcggctggac gcctgcgaaa aaaaccattc acccaagccc gtcaaactca
     2221 ctgcgttcgt ctgaccaccc ccttttttcg cccctgtatt tggtcgctca aaaatgtggt
     2281 ggtcagacgc ttcgcttgac ggggggcttt gcccccaaaa cgaaacacgt tcactggggt
     2341 tcacttgcca tcgctggggc gtgtcatttc gtttcggctc cccctgtttt tccctttctt
     2401 cgctggacgc tcatcaggat aaaaacaaaa agcctaccgc cctcgtttta ctcggttggt
     2461 caaatcgctt cttgccacaa aacaagtttg tgactttcag cgatttcgca tcgttttact
     2521 tgtcagtttg cacgatgtta aaaacgcact cagaagcccg caaaaccgtt ctaaactttc
     2581 agcgtagatt tgggtgtttt atagggtgat cgtgtcttaa aatcgtttcg aggggcttta
     2641 atggggatga acgggaggtt tttgctaact aactcgcccg ttt
//
