LOCUS       AP024351                2264 bp    DNA     circular BCT 10-DEC-2022
DEFINITION  Salmonella enterica SEOhiM1960 plasmid pSEOhiM1960b DNA, complete
            genome.
ACCESSION   AP024351
VERSION     AP024351.1
DBLINK      BioProject: PRJDB10937
            BioSample: SAMD00206787
            Sequence Read Archive: DRR261751, DRR261752
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Shigemura,H., Carle,Y., Etoh,Y. and Murakami,K.
  TITLE     Dissemination of ESC-resistant Salmonella chromosomally-integrated
            with blaCMY-2-carrying-IncA/C2 plasmid by ISEcp1 or IS26 in layer
            breeding chains in Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Shigemura,H., Carle,Y., Etoh,Y. and Murakami,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2021) Contact:Hiroaki Shigemura Fukuoka Institute
            of Health and Environmental Sciences; 39 Mukaizano, Dazaifu, Fukuoka
            818-0135, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Unicycler v. 0.4.4
            Genome Coverage       :: 138x
            Sequencing Technology :: GridION X5; MiSeq
            ##Genome-Assembly-Data-END##
            Annotated at DFAST https://dfast.nig.ac.jp/
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SEOhiM1960"
                     /db_xref="taxon:28901"
                     /plasmid="pSEOhiM1960b"
     gene            1546..1746
                     /locus_tag="SAML1960_46100"
     CDS             1546..1746
                     /locus_tag="SAML1960_46100"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="BCQ98290.1"
                     /translation="MNLCPDERLLFVRMISAMLRRSGGDAGAVMFEAYRHIVSDTNQAR
                     RSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(1794..1982)
                     /gene="rop"
                     /locus_tag="SAML1960_46110"
     CDS             complement(1794..1982)
                     /gene="rop"
                     /locus_tag="SAML1960_46110"
                     /inference="COORDINATES: ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:RefSeq:WP_002213433.1"
                     /codon_start=1
                     /transl_table=11
                     /product="rop protein"
                     /protein_id="BCQ98291.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="rop"
     Typing          1164..1336
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="2.04e-62"
     Typing          complement(694..1239)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.989"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 gcttccagct gatttagccg gttagctgct tttttgcggg cttcgccttt tgccatgcca
       61 tttcctatcc caaaatcacc caggaaacct aatacggtgc gcccgtcaaa ttcgccggtt
      121 gcctcaattt cttgttgtac actgcgcgtt tttgcgattt ccagagctac cgctttgcaa
      181 tccattgcgg aagattctgg accggtgacg ttcgcggcct gtggatattg ctttgttgcg
      241 catcctgcca tgatcagcgc tgccgatagg atgaatattt ttttcaaaat tatccttatt
      301 ttatttaggc atagttaaga gatacccatt ttatcggcag gaaatgaggg ttttttagtt
      361 gaattttggg aggggcaagg ttccatattg gtcgaggatt ctggagctga ccggcaacgg
      421 ccagcgcggc tatgggccat gcggtggttg agcatagaaa ggatcttctt gagttccttt
      481 ttttctacgc gtaatctctt gctctgaaaa cgaaaaaacc acctggggag gtggtttttc
      541 gaaggttaag tcagttgggg aactgcttaa cctggtaact ggcttcagca gagcgcagat
      601 accaaatact gtccttccag tgtagccgta gttaggccac cacttcaaga actctatagc
      661 accatctaca ttaactcgct ctgctaatcc tgttaccagt ggctgctgcc agtggcgctt
      721 tgtcgtgtct ttccgggttg gactcaagac gatagttacc ggataaggcg cagcagtcgg
      781 actgaacggg gggttcgtgc atacagtcca gcttggagcg aactgccttc ccggaaccga
      841 gtgtcaggcg tggaatgaga aaccgcggcc ataacagcgg aatgacaccg gtacaccgaa
      901 aggcaggaac aggagagcgc acgagggagc caccaggggg aaacgcctgg tatctttata
      961 gtcctgtcgg gtttcgccac cactgatttg agcgtcagat ttcgtgatgc ttgtcagggg
     1021 ggcggagcct atggaaaaac ggcttcgccg cggccttatc gtttccctgt taagtttctt
     1081 cctggcatct cccaggaaat ttccgcccca ttcgtaagcc cgcaccgctc gccgcagccg
     1141 aacgaccgag cgcagcgagt cagtgagcga ggaagcggaa tatctcctgt ctcatatatt
     1201 ccgcttacgc tctgctgctg cattttcctc ctgccacatg aagcacttca ctgattcccg
     1261 cacccgtgcc tacatagtaa gccagtatac actccgctag cgctacgtga ctggttcagg
     1321 gctgcgcccc gacacccgct aaaagcactg acgcgcctgc ggcttgccca accccgcgcc
     1381 gtccgggaaa gaatttcccg atcgacccga cgtttctgtt tacctgtgat gttaacgttt
     1441 ggatcttttt cccgggttta cctattttaa tgaagcgtaa tgaagcgttc acagctgacg
     1501 ttaatagatg ggtgcttcat gtttggtttt tcaccaggag aacttatgaa cctttgcccc
     1561 gatgaacgtc tgctctttgt gcggatgatt tccgctatgc ttcgccgttc gggcggtgat
     1621 gcgggtgctg ttatgtttga ggcgtatcgc catattgtgt ccgataccaa tcaagctcgt
     1681 cgttcctaca tgctcgacct gctcgaaagc gtcaggcatg actatgtaca cggtggatat
     1741 acatagttgc cctggatacg cttttcgtct aagtgagcgt tcttttcgtc tctttattcg
     1801 ccgtcctgta taccgaagcg tgcgctcagc ttctgataaa gcgcttctgc ctgttcgtgc
     1861 attcgctcac agtcggctgc ctcgtcatca agatcgagca cgtcgagttt ttcgagcagc
     1921 agcagcgact gcgcccggat aaattttgcc atgttcagtg cggctgattc ctgttttgtc
     1981 atacggcttt ttcccggttt tatggtgatc gcagactgaa atcttacttc attcacttga
     2041 gtgcatagcc atgcaggtac gcagaaatca tcaggggcgt tttttctcga tatgggcaca
     2101 gaaaggtgta tgtttcaggc cggagtcctc agaaacgccc tgagggcgcc tgaggcggtg
     2161 cgggcaacgg atgttatggt aaatccagct gattggcagg tacaaaaaaa gccccgcagg
     2221 gcttttttgt accttattga actgcacact ttgcagcctt cagg
//
