NZ_CP120998.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

NZ_CP120998.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	PKS-like,NRPS-like,NRPS,butyrolactone,T1PKS,oligosaccharide	20,681	245,800
Region 2	T2PKS,butyrolactone	263,475	329,812

NZ_CP120998.1 - Region 1 - NRPS,NRPS-like,PKS-like,T1PKS,butyrolactone,oligosaccharide

Download region GenBank file

Download region SVG

Location: 20,681 - 245,800 nt. (total: 225,120 nt) Show pHMM detection rules used

PKS-like: (t2pks2 or ksIII)
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
NRPS: cds(Condensation and (AMP-binding or A-OX))
butyrolactone: AfsA
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
oligosaccharide: (minimum(3, [DUF1205, Glyco_transf_28, Glycos_transf_1, Glycos_transf_2, MGT]) and minscore(MGT, 150))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 20680 - 245800:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal - Me-ohmal) + (Me-ohmal - ohmal - Me-ohmal) + (ohmal - ohmal - mal - Me-ohmal - redmal) + (ohmal - ohmal) + (ccmal - ccmal) + (mal - Me-ccmal) + (Me-ohmal - Me-ohmal - ccmal) + (Me-ccmal) + (X) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 43594 - 87125:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 60852 - 104257:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-ccmal) + (X) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 6, location 83186 - 244248:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal - Me-ohmal) + (Me-ohmal - ohmal - Me-ohmal) + (ohmal - ohmal - mal - Me-ohmal - redmal) + (ohmal - ohmal) + (ccmal - ccmal) + (mal - Me-ccmal) + (Me-ohmal - Me-ohmal - ccmal) + (Me-ccmal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_49

AMP-binding (68..453): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: AHSCVAGAQK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

ctg1_61

AMP-binding (90..522): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: LVRAVGSLVK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

ctg1_76

AMP-binding (7..224): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: PRTSGGGVVK
Nearest Stachelhaus code(s):: diOH-Bz PMPSGGVVNK (29% 8Å match)
Stachelhaus code match:: 60% (weak)

AMP-binding (743..1075): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAG-LGSLVK
Nearest Stachelhaus code(s):: Pca DMGVLGCLMK (32% 8Å match); Leu DAWFLGNVVK (29% 8Å match); Hpg DALHLGLLCK (24% 8Å match)
Stachelhaus code match:: 60% (weak)

ctg1_95

AMP-binding (135..310): X

nrpys: (unknown)

SVM prediction details:

NOTE: uncertain match

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ---RYGTLGK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

ctg1_96

CAL_domain (34..442): pk

minowa: AHBA

Prediction, score:

AHBA: 329.2
shikimic_acid: 264.9
NH2: 14.6
fatty_acid: 0.0
Acetyl-CoA: 0.0

PKS_AT (1176..1467): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 196.7
Ethylmalonyl-CoA: 172.0
Methoxymalonyl-CoA: 160.3
Malonyl-CoA: 112.9
2-Methylbutyryl-CoA: 110.5
trans-1,2-CPDA: 110.1
CHC-CoA: 103.0
Propionyl-CoA: 97.4
Isobutyryl-CoA: 83.0
Benzoyl-CoA: 59.5
Acetyl-CoA: 39.3
inactive: 38.5
3-Methylbutyryl-CoA: 34.6
fatty_acid: 30.2

ctg1_99

PKS_AT (24..288): pk

ATSignature: (unknown)

No matches above 50%

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg1_104

PKS_AT (560..851): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 196.7
Ethylmalonyl-CoA: 183.6
Methoxymalonyl-CoA: 157.2
trans-1,2-CPDA: 117.2
2-Methylbutyryl-CoA: 107.3
Malonyl-CoA: 105.7
Propionyl-CoA: 96.1
Isobutyryl-CoA: 85.8
CHC-CoA: 82.7
Benzoyl-CoA: 64.9
Acetyl-CoA: 53.0
3-Methylbutyryl-CoA: 40.0
inactive: 37.2
fatty_acid: 31.8

PKS_AT (2086..2380): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 202.4
Ethylmalonyl-CoA: 185.2
Methoxymalonyl-CoA: 163.2
trans-1,2-CPDA: 124.5
2-Methylbutyryl-CoA: 112.4
Malonyl-CoA: 109.9
Propionyl-CoA: 101.1
Isobutyryl-CoA: 83.9
CHC-CoA: 79.7
Benzoyl-CoA: 67.4
Acetyl-CoA: 49.6
inactive: 36.8
fatty_acid: 29.0
3-Methylbutyryl-CoA: 28.0

PKS_AT (3626..3926): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 206.7
inactive: 92.1
Methoxymalonyl-CoA: 63.7
Methylmalonyl-CoA: 58.7
Propionyl-CoA: 38.7
Isobutyryl-CoA: 30.4
Ethylmalonyl-CoA: 19.5
Acetyl-CoA: 18.9
fatty_acid: 15.3
CHC-CoA: 13.2
Benzoyl-CoA: 11.7
2-Methylbutyryl-CoA: 10.4
trans-1,2-CPDA: 9.7
3-Methylbutyryl-CoA: 0.0

ctg1_105

PKS_AT (528..798): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 185.1
inactive: 73.7
Methoxymalonyl-CoA: 57.5
Methylmalonyl-CoA: 49.5
CHC-CoA: 20.3
Propionyl-CoA: 19.3
Acetyl-CoA: 18.3
Benzoyl-CoA: 17.6
Isobutyryl-CoA: 17.1
fatty_acid: 11.6
Ethylmalonyl-CoA: 10.7
2-Methylbutyryl-CoA: 10.6
3-Methylbutyryl-CoA: 7.7
trans-1,2-CPDA: 0.0

PKS_AT (1508..1804): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Malonyl-CoA: 91.7%; Methoxymalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 208.6
Ethylmalonyl-CoA: 199.4
Methoxymalonyl-CoA: 170.2
2-Methylbutyryl-CoA: 143.3
Malonyl-CoA: 111.9
trans-1,2-CPDA: 107.1
Propionyl-CoA: 100.0
Isobutyryl-CoA: 94.7
CHC-CoA: 94.2
Acetyl-CoA: 65.5
Benzoyl-CoA: 57.9
3-Methylbutyryl-CoA: 37.8
inactive: 30.5
fatty_acid: 29.5

ctg1_118

PKS_AT (539..818): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 189.7
inactive: 73.9
Methoxymalonyl-CoA: 58.6
Methylmalonyl-CoA: 53.0
CHC-CoA: 21.2
Benzoyl-CoA: 20.2
Acetyl-CoA: 19.8
Propionyl-CoA: 19.1
Isobutyryl-CoA: 17.4
Ethylmalonyl-CoA: 16.0
fatty_acid: 14.6
2-Methylbutyryl-CoA: 11.9
trans-1,2-CPDA: 8.8
3-Methylbutyryl-CoA: 8.8

PKS_AT (2286..2575): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 200.9
inactive: 103.4
Methoxymalonyl-CoA: 72.5
Methylmalonyl-CoA: 61.5
Propionyl-CoA: 38.7
Isobutyryl-CoA: 27.4
Ethylmalonyl-CoA: 22.0
CHC-CoA: 21.8
fatty_acid: 20.8
Acetyl-CoA: 19.9
Benzoyl-CoA: 19.8
2-Methylbutyryl-CoA: 19.6
trans-1,2-CPDA: 19.2
3-Methylbutyryl-CoA: 0.0

ctg1_119

PKS_AT (598..877): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 185.6
inactive: 69.7
Methoxymalonyl-CoA: 53.8
Methylmalonyl-CoA: 47.8
Propionyl-CoA: 18.2
Benzoyl-CoA: 15.0
Isobutyryl-CoA: 14.8
CHC-CoA: 13.4
Acetyl-CoA: 11.0
Ethylmalonyl-CoA: 10.7
2-Methylbutyryl-CoA: 8.5
fatty_acid: 8.4
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (2027..2303): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 183.8
inactive: 74.3
Methoxymalonyl-CoA: 56.7
Methylmalonyl-CoA: 51.8
CHC-CoA: 21.2
Benzoyl-CoA: 20.2
Acetyl-CoA: 20.0
Isobutyryl-CoA: 17.9
Propionyl-CoA: 17.6
Ethylmalonyl-CoA: 14.6
fatty_acid: 14.1
2-Methylbutyryl-CoA: 10.9
3-Methylbutyryl-CoA: 8.5
trans-1,2-CPDA: 8.4

ctg1_120

PKS_AT (549..828): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 189.5
inactive: 78.5
Methoxymalonyl-CoA: 57.9
Methylmalonyl-CoA: 50.9
CHC-CoA: 22.2
Benzoyl-CoA: 20.2
Acetyl-CoA: 19.8
Propionyl-CoA: 16.0
Ethylmalonyl-CoA: 14.6
Isobutyryl-CoA: 14.5
fatty_acid: 13.1
2-Methylbutyryl-CoA: 12.4
trans-1,2-CPDA: 8.8
3-Methylbutyryl-CoA: 5.2

PKS_AT (1975..2252): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 187.3
inactive: 74.8
Methoxymalonyl-CoA: 58.2
Methylmalonyl-CoA: 52.3
CHC-CoA: 21.2
Benzoyl-CoA: 20.2
Acetyl-CoA: 19.8
Propionyl-CoA: 17.9
Isobutyryl-CoA: 17.9
fatty_acid: 14.6
Ethylmalonyl-CoA: 14.6
2-Methylbutyryl-CoA: 11.9
3-Methylbutyryl-CoA: 9.0
trans-1,2-CPDA: 8.8

PKS_AT (3496..3775): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 194.9
inactive: 74.1
Methoxymalonyl-CoA: 59.3
Methylmalonyl-CoA: 53.6
Propionyl-CoA: 24.7
Isobutyryl-CoA: 19.4
Acetyl-CoA: 18.9
CHC-CoA: 18.4
Benzoyl-CoA: 17.2
Ethylmalonyl-CoA: 15.0
2-Methylbutyryl-CoA: 11.1
fatty_acid: 9.7
3-Methylbutyryl-CoA: 3.7
trans-1,2-CPDA: 0.0

PKS_AT (4791..5082): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 196.8
Ethylmalonyl-CoA: 179.6
Methoxymalonyl-CoA: 157.2
trans-1,2-CPDA: 113.2
Malonyl-CoA: 112.4
2-Methylbutyryl-CoA: 108.6
Isobutyryl-CoA: 90.9
Propionyl-CoA: 90.7
CHC-CoA: 80.5
Benzoyl-CoA: 69.7
Acetyl-CoA: 55.7
inactive: 43.5
3-Methylbutyryl-CoA: 43.0
fatty_acid: 31.8

PKS_AT (6342..6626): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 186.5
inactive: 77.8
Methoxymalonyl-CoA: 64.4
Methylmalonyl-CoA: 59.4
CHC-CoA: 24.2
Isobutyryl-CoA: 20.8
Acetyl-CoA: 20.7
Propionyl-CoA: 20.6
Benzoyl-CoA: 19.9
Ethylmalonyl-CoA: 15.6
fatty_acid: 14.8
2-Methylbutyryl-CoA: 12.2
trans-1,2-CPDA: 10.7
3-Methylbutyryl-CoA: 6.2

ctg1_121

PKS_AT (558..849): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 200.6
Ethylmalonyl-CoA: 190.0
Methoxymalonyl-CoA: 159.3
2-Methylbutyryl-CoA: 119.9
trans-1,2-CPDA: 116.6
Malonyl-CoA: 108.8
Propionyl-CoA: 94.9
Isobutyryl-CoA: 89.4
CHC-CoA: 88.1
Benzoyl-CoA: 65.4
Acetyl-CoA: 53.3
3-Methylbutyryl-CoA: 40.9
inactive: 35.9
fatty_acid: 30.8

PKS_AT (2075..2360): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 185.0
inactive: 75.2
Methoxymalonyl-CoA: 58.5
Methylmalonyl-CoA: 49.6
CHC-CoA: 20.7
Isobutyryl-CoA: 17.7
Acetyl-CoA: 16.7
Benzoyl-CoA: 16.4
Propionyl-CoA: 13.4
Ethylmalonyl-CoA: 11.8
fatty_acid: 10.2
3-Methylbutyryl-CoA: 7.5
2-Methylbutyryl-CoA: 7.5
trans-1,2-CPDA: 0.0

PKS_AT (3529..3824): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 205.0
Ethylmalonyl-CoA: 189.9
Methoxymalonyl-CoA: 165.8
2-Methylbutyryl-CoA: 136.6
trans-1,2-CPDA: 119.6
CHC-CoA: 102.1
Propionyl-CoA: 101.9
Malonyl-CoA: 100.6
Isobutyryl-CoA: 78.0
Benzoyl-CoA: 62.3
Acetyl-CoA: 28.6
inactive: 26.8
3-Methylbutyryl-CoA: 21.4
fatty_acid: 16.8

ctg1_122

PKS_AT (566..842): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 225.3
inactive: 109.7
Methoxymalonyl-CoA: 65.5
Methylmalonyl-CoA: 60.3
Propionyl-CoA: 32.9
Isobutyryl-CoA: 31.3
Acetyl-CoA: 24.8
Ethylmalonyl-CoA: 21.3
CHC-CoA: 20.5
fatty_acid: 18.5
Benzoyl-CoA: 15.2
2-Methylbutyryl-CoA: 14.9
trans-1,2-CPDA: 11.9
3-Methylbutyryl-CoA: 0.0

PKS_AT (2246..2541): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 87.5%; Methoxymalonyl-CoA: 79.2%; Malonyl-CoA: 79.2%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 192.7
Ethylmalonyl-CoA: 174.9
Methoxymalonyl-CoA: 153.9
2-Methylbutyryl-CoA: 139.6
Propionyl-CoA: 104.1
Malonyl-CoA: 91.4
trans-1,2-CPDA: 90.5
CHC-CoA: 74.7
Isobutyryl-CoA: 73.3
Acetyl-CoA: 46.2
Benzoyl-CoA: 43.2
fatty_acid: 30.1
inactive: 27.1
3-Methylbutyryl-CoA: 20.9

NZ_CP120998.1 - Region 2 - T2PKS,butyrolactone

Download region GenBank file

Download region SVG

Location: 263,475 - 329,812 nt. (total: 66,338 nt) Show pHMM detection rules used

Region on contig edge.

T2PKS: (t2ks and t2clf)
butyrolactone: AfsA

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS substrates

Type II PKS

NRPS/PKS substrate predictions

Type II PKS gene cluster prediction details

Cluster section:: 263474 to 329812
Starter unit(s):: acetyl-CoA (Score: 0.0; E-value: 0)
Malonyl elongations:: 8|9 (Score: 711.9; E-value: 4.4e-217)
Product class(es):: angucycline
Product molecular weight(s):: acetyl-CoA_8: 353 Da
acetyl-CoA_9: 395 Da

ctg1_175: CYC C7-C12 (Score: 223.2; E-value: 8.2e-69)
ctg1_178: KR (Score: 177.3; E-value: 1e-54)
ctg1_194: OXY (Score: 530.4; E-value: 1.1e-161)
ctg1_197: OXY (Score: 607.8; E-value: 3.4e-185)
ctg1_198: CYC C4-C17/C2-C19 (Score: 193.9; E-value: 6.2e-60)
ctg1_199: KS (Score: 792.9; E-value: 1.5e-241)
ctg1_200: CLF 8|9 (Score: 711.9; E-value: 4.4e-217)
ctg1_201: ACP (Score: 122.5; E-value: 1.2e-38)
ctg1_202: KR C9 (Score: 480.5; E-value: 2.7e-147)
ctg1_203: CYC C7-C12 (Score: 496.4; E-value: 6e-152)
ctg1_204: KR C15 (Score: 470.0; E-value: 4.1e-144)