LOCUS       NZ_CP061479.1           7160 bp    DNA     linear   UNK 01-JAN-1980
DEFINITION  NZ_CP061479.1 Staphylococcus lugdunensis strain CGMH_SL138 plasmid
            pCGMH_SL138, complete sequence.
ACCESSION   NZ_CP061479
VERSION     NZ_CP061479.1
KEYWORDS    .
SOURCE      
  ORGANISM  
            .
COMMENT     ##antiSMASH-Data-START##
            Version      :: 7.1.0
            Run date     :: 2024-06-07 23:49:18
            NOTE: This is a single region extracted from a larger record!
            Orig. start  :: 0
            Orig. end    :: 7160
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             1..2160
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: TIGR01193"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) Peptidase_C39"
                     /gene_functions="resistance (resist) ABC_efflux (Score:
                     251.8; E-value: 8.1e-77)"
                     /gene_functions="transport (smcogs) SMCOG1288:ABC
                     transporter related protein (Score: 283.5; E-value:
                     5.8e-86)"
                     /gene_kind="biosynthetic"
                     /locus_tag="ctg1_1"
                     /sec_met_domain="Peptidase_C39 (E-value: 3.5e-40, bitscore:
                     128.0, seeds: 36, tool: rule-based-clusters)"
                     /sec_met_domain="TIGR01193 (E-value: 6.8e-190, bitscore:
                     623.9, seeds: 5, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MMAIKFIRQYDEKDCGPTCLAMISQFYGKRVSIPRLREYAKTDKL
                     GTNLYGLVQAGKKIGIELTGVKADSFDDLKQAQLPVMVHIINQQGYDHYIIIEKIKNNT
                     LYIVDPAKGKYKLSSTEFGKYWTNIAVLIDKTDDFTTDNESPSYLNIFIDIFKNNYGKL
                     LFIAFISLFINIVGIVGALYFKLLTDHIIPSNVLKNLHIISFGILLLYIINALINYLRF
                     QLILHLSLKIDVNLMKDYFYHVLHLPMNFFDTRKSGEILQRFMDTSKIREALSSSTVTL
                     LVDTFMIIIGAILLYMQSPLLLLITIIFIPCFIICSYTLRKPFEKYNQKVAEKDAELSS
                     YLIESFDGSNTIKSYQSEDDRFYIGTTKFNGIIENLLKLGRFSNIQLTVNNFLKLTISL
                     VILWLGSYLVMTDSMTLGSLLAFNALTIYYLDPIERLINIQPTLQSSFVAARRIAEITD
                     LETETELYTSKQPYTFKNNIRIENVNFQYGFRSVVLKDINLNIKKGQKVAIVGESGSGK
                     STIGKLLNRYYTASEGNIMIDNYIIDDIDLSDLRKNIGYVSQNTFLFADTIKNNLLHGS
                     NKYKSDEDIVKACQLAESLDFIQKFPDQFNTMLEKEGANLSGGQGQRLSLARTFLKDPD
                     IYIFDEATSALDSLTENKIMEHIDLLTQHGKTVIIISHKLSTIKNADNIYVLNEGQIAE
                     NGTHDELIHLNGIYKNLWQLQMKID"
     protocluster    1..7160
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="True"
                     /core_location="[0:2160]"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      1..2160
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     cand_cluster    1..7160
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     region          1..7160
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="RiPP-like"
                     /region_number="1"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))"
                     /tool="antismash"
     CDS             2317..2460
                     /locus_tag="ctg1_2"
                     /transl_table=11
                     /translation="METLNEKQLKDINGGRETGCSGDFVEDGIMCNIGQGIGKAINKVR
                     GK"
     CDS             2481..2630
                     /locus_tag="ctg1_3"
                     /transl_table=11
                     /translation="MKTLNEKQLKDINGGKGIVGEVTGEVTSIGNAISNGWHDLKQSVA
                     DTTK"
     CDS             complement(2753..2974)
                     /locus_tag="ctg1_4"
                     /transl_table=11
                     /translation="MAKYWKENQEGLLNDGEALTILMMLYNEHPYVVQLPCLNKQLQDD
                     NRYAQPTYTIYSTTKNRKENKRRIKNSI"
     CDS             complement(3057..3242)
                     /locus_tag="ctg1_5"
                     /transl_table=11
                     /translation="MQNTYIKKWVSLSSIISYSIEIFKCLYSEFSFPLNDVLLEGTDKK
                     ASKEYINKNQKTFYCL"
     CDS             complement(3626..3973)
                     /locus_tag="ctg1_6"
                     /transl_table=11
                     /translation="MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKL
                     KIILSLIKEDELCVCDISLILKISVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEI
                     KEFFSKNQEGF"
     CDS             complement(3992..4609)
                     /locus_tag="ctg1_7"
                     /transl_table=11
                     /translation="MIQTIVTAAILYIATAVDLLVILLIFFARAKTKKEYRDIYIGQYV
                     GSVALIVVSLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNEKG
                     LSKLVGTVAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVFTAQKLSN
                     IPGVGEIVEKFSRWIMAVIYIALGLFIIIENDTIQTILGFIF"
     CDS             complement(4917..5591)
                     /locus_tag="ctg1_8"
                     /transl_table=11
                     /translation="MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHS
                     TIYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDTEGHTLDIWL
                     RKQRDNHSAYAFIKRLIKQFGKPQKVVTDQAPSTKAAMAKIIKAFKLKPDCHCTSKYLN
                     NLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIML
                     AS"
     CDS             complement(5621..6847)
                     /locus_tag="ctg1_9"
                     /transl_table=11
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EGSVAKLNL"
ORIGIN
        1 atgatggcta taaaatttat aagacaatac gatgaaaagg attgtggtcc tacttgcctt
       61 gccatgattt cacagtttta tggtaagcgt gtatctatcc cacgtttgcg cgaatatgct
      121 aaaacagata aattaggtac aaatttatat ggtctcgtac aagcaggtaa aaagattggt
      181 attgagttaa ctggcgtaaa agctgattcc tttgatgatt taaaacaagc acaattacca
      241 gttatggtac atattattaa tcaacaaggt tatgatcact atatcattat tgaaaaaata
      301 aaaaataaca cgctttatat tgtcgatcct gctaaaggta aatataagtt atcaagtact
      361 gaatttggaa aatattggac taatattgct gtattaattg ataaaacaga tgattttact
      421 actgacaatg aatcaccctc gtatcttaat atttttattg atatatttaa aaataattat
      481 ggaaagttgt tatttattgc ttttatctca ctatttatta atattgttgg tattgtcggg
      541 gctctatatt ttaaattatt aaccgatcat attattccat ccaatgttct taaaaattta
      601 catattatta gcttcggtat tttactttta tacataatca atgcactcat taattattta
      661 aggtttcaac ttatcttaca tttaagtttg aaaatcgatg ttaatttaat gaaagattat
      721 ttttatcatg ttttacatct tccgatgaac ttttttgata cacgtaaatc tggcgaaatc
      781 ctacaacgtt tcatggatac atctaaaatt cgtgaagctt tatcatcttc aacggtaacg
      841 ttgctagttg atactttcat gattattatc ggtgctatat tactttatat gcaaagtcct
      901 ttgttactac tgataacaat tatttttata ccttgtttta ttatttgtag ttacacttta
      961 cgtaaacctt ttgaaaaata taatcaaaag gtggctgaaa aagatgctga attgagttca
     1021 tatttaatag aatcctttga tggtagtaat actattaaaa gttatcaatc tgaagacgat
     1081 cgtttctaca ttggtactac taaatttaat ggtattattg aaaacttatt aaaactgggt
     1141 agattttcta atatacaatt aacggttaac aactttttaa aattaactat cagtcttgtt
     1201 atattgtggc ttggtagtta cttagtcatg acggatagta tgacgttagg tagtttatta
     1261 gcttttaatg ccttaactat ttattacctt gatcctattg aacgtctcat aaatattcaa
     1321 ccaacactgc aatcttcatt tgttgcagca cgtcgtattg ctgaaataac tgatttagag
     1381 accgaaactg aattatatac ttctaaacaa ccttatactt ttaaaaacaa cattcgcatt
     1441 gaaaatgtaa actttcagta tggctttcga agtgtggtat tgaaggatat taatttaaat
     1501 attaaaaaag ggcaaaaggt tgctattgtt ggtgaaagtg gtagtggtaa atcaactata
     1561 ggtaagttac tcaatcgcta ttacactgct tcagaaggta atattatgat tgataactat
     1621 attattgatg atattgatct ttctgactta cgtaagaata taggctatgt ttcacaaaac
     1681 acattccttt ttgctgatac aattaaaaac aatcttttac atggtagcaa taaatacaaa
     1741 agtgatgaag atatcgttaa agcttgtcaa ttagcagaat ccttagattt tatacagaaa
     1801 ttcccagatc agtttaacac tatgttagaa aaagaaggag ctaatctatc gggcggacaa
     1861 ggccaacgct tatctttagc acgtacattt ttaaaagatc ctgatatata tattttcgat
     1921 gaagctacaa gtgccttaga tagtttaact gaaaacaaaa ttatggagca tattgactta
     1981 ctaactcaac atggtaaaac cgtaattatt atttcacata aattaagtac tataaaaaat
     2041 gctgataata tctatgtttt aaacgagggt caaattgctg agaatggtac acatgatgag
     2101 ttgattcatt taaacggtat atataaaaat ttatggcaac ttcaaatgaa aatagactga
     2161 ttttatatta atatactcta tttattaaat atatttcgat aataaaaaaa ataaactcaa
     2221 aaaaaagctc acttaactgt ctatttacat tctctttata ttcaaatgct aatttataag
     2281 atgtaagatg aaattactta aaggaggact atttcaatgg aaacactaaa tgaaaaacaa
     2341 ttaaaagata tcaatggtgg tcgtgaaact ggttgttctg gtgattttgt agaagatgga
     2401 ataatgtgca atatcggaca aggtattggt aaagcaatta ataaagtacg aggaaaataa
     2461 tttaaaggag gactatttca atgaaaacac taaatgaaaa acaattaaaa gatatcaatg
     2521 gtggtaaagg gattgttggt gaagtcactg gcgaagtcac tagtattggt aatgccattt
     2581 caaatggttg gcatgattta aaacagtctg tcgctgatac tacaaaatag gactcattat
     2641 ttaaattaaa aaagtctggg taataaccca gactttttta attgttcgac tttaaataat
     2701 taaattatct atatattatt ttaatataac aaaattaatt atcttattaa ggttatatgc
     2761 tattttttat tcttctttta ttctcttttc tgtttttggt tgtagaatat atagtatacg
     2821 tgggttgagc gtatctgttg tcatcttgta gttgcttatt taaacacggt aattgtacta
     2881 catatggatg ctcattatat aacatcatta atatagttaa tgcttcccca tcatttaata
     2941 atccctcttg attttctttc caatatttag ccatttttgc atcttttatt tttttaataa
     3001 ccaatgatac tgtttgcaat tatcgaagtt actagtaaaa agaaagtaat agatgattat
     3061 agacaataaa aagttttttg attcttgttt atatattctt tactcgcttt tttatcagta
     3121 ccttctagca atacatcatt taacggaaaa ctaaattctg aatacaaaca cttaaatatt
     3181 tctatactat aacttatgat actactcaaa gatacccatt ttttaatata agtgttttgc
     3241 attcttctac taaccagtgt tataatttag acaacaagag cttcgtacat tatatgcacc
     3301 aatcccctca ctactcgcaa tagtgagggg atttttaggt gttggctaat atcgcctatt
     3361 ttttcttatt gttacgtgta cgtagccaat gcgtaaataa cgcaacaata caaccactga
     3421 tgactgtggt cgtgatgtga acaagagctt cgaccatctg atatgcacct cctctctgcg
     3481 tctaaattga cgcctgagag ataggcgacc tgtatattat atcatctctg aataagggat
     3541 aatagataac ttccgataag tcattttatg ttatatcttt gcttttttat agtatcaaga
     3601 caagaagaaa ctcgtttcac tcgtttcaaa aaccctcctg atttttagag aaaaattctt
     3661 ttatttcatc gtctttaata aaataatatg ccatctttcc ctttttataa aaatcaagta
     3721 catcattttt atataaaagt cttaaatgat gtgaagttga agcaacactt attttcaata
     3781 tcaaagaaat atcacaaaca cacaactcat cttctttaat caaagataat atgattttca
     3841 atttcttctc atcacaaatt ttttctaaaa tgttaagtaa tttcttagat ttatcatctt
     3901 ctaaaaaact taaagcattg ttaactttat cctcatgtac acagatcaca tcacaagcat
     3961 tttcataact catataaaat cgcaccctaa attaaaatat aaatcctaaa attgtttgaa
     4021 tagtatcatt ttcaataata ataaataaac ctaaagctat ataaataaca gccataatcc
     4081 aacgactaaa tttctcaaca atttctccaa ctcctggaat attagataat ttttgtgcag
     4141 taaataccaa gaagaaaatt aaaattaaaa agacaaacag agtaattaat aaattagtaa
     4201 cacttaatgt cacaaaatac ggaacaaata aaccaatatt atcagcacca caacttgcta
     4261 tcgtaacaat tgcaaccgta ccaactaatt tagacaatcc tttttcattc aattcttttt
     4321 tagctctctt ttctccttca caatcatcat aaatagctac tttaattcct aaataaatcg
     4381 gtattaaccc taataatcct aatatccatt tttcaggaac ataatttaag acaaaggcaa
     4441 agaataaact tacgacaatc aatgccacag atcctacata ttgaccaata taaatatctc
     4501 gatattcttt cttagtcttt gctctagcaa aaaatattaa taaaatcact aataaatcta
     4561 ctgctgtcgc aatataaaga atagcagcag ttacaatagt ctgaatcata attacacctc
     4621 attcaaaaat atttttgaat gtattataac ttatgttttc aaataatcat agatgcttta
     4681 ttccaattgc tttattgacg ttgagcctcg gaacccttaa caatcccaaa acttgtcgaa
     4741 tggtcggctt aatagctcac gctatgccga cattcgtctc caagtttagt taagggttct
     4801 tctcaacgca caataaattt tctcggcata aatgccgtgt tataattaaa atacttttgg
     4861 ttctgttgca aagtaaaaaa tatagctaat cactaatata tcatgtcagt gttcgtttaa
     4921 cttgctagca tgatgctaat ttcgtggcat ggggaaaatc cgtagatctg aagagaccta
     4981 cggttctttt tatatagagc gtaaatacat tcaatacctt ttaaagtatt ctttgccgta
     5041 ttgatacttt gatatcttgt ctttcttact ttaatatgac ggtgatcttg ctcaatgagg
     5101 ttattcagat atttcgatgt acaatgacag tcaggtttaa gtttaaaagc tttaattatt
     5161 ttagccattg ctgccttcgt tgaaggtgcc tgatctgtaa ctaccttttg aggcttacca
     5221 aattgtttaa tgagacgttt gataaacgca tatgctgaat gattatctcg ttgcttacgc
     5281 aaccaaatat ctaatgtatg tccctctgta tcaatggcac gatataaata gctccatttt
     5341 ccttttattt tgatatacgt ctcatcaata cgccatttgt aataagcttt tttatgcttt
     5401 ttcttccaaa tttgatataa aattggggca tattcttgaa cccaacggta gatcgttgaa
     5461 tgatgaacgt ttacaccacg ttctcttaat atttcagata tatcacgata gctcaatgca
     5521 tatcttagat agtagccaac ggctacagtg ataacatcct tgttaaattg tttatatctg
     5581 aaatagttca tacagaagac tcctttttgt taaaattata ttataaattc aactttgcaa
     5641 cagaaccttc ttgttgctgt tcctgttctg aatataattc tggattcatt tttttatcta
     5701 agtttcctgc taaaccattt agttttggtt catcttctgt taacttatta actctttccg
     5761 caaaggtatt tcttcctaaa actcgttcta actcttttag taagattttt aaaagcttta
     5821 acgctatttc tatattctct ttaagtggct ttgcattttc gtaaagttgg ttaaaattat
     5881 cgtctgcgtt ttcaatacgc tcaactgctt tatttaataa atcatctttc tctcgtattt
     5941 ccttatcttt atcatctaag gctctaccag actttatata ctcgtaatct tccgaaatat
     6001 cttgagcagc ttttatctgt ttctgaaatt cattgaaatc tttttggctt attacaacat
     6061 ttccagtttc ttgtatttct ttgctaaata aaccacctac tttttcagtt tcttgctcat
     6121 acggaacatt tataggcttt ttaagcgtat ttaacgattt ttggtactct tgcattaatt
     6181 tatcgttctt ttgctttata tggtctgttt tttggctctc acgttcatat tcttgcttat
     6241 gatattctgt tttttgttta tactgactta tttgctcatg tttagcattt gttacttgtc
     6301 ttgattgccc acgttctaaa tcatatcctc gttgtttaac atgctcatta aatctatctt
     6361 gaaacgctgt taaagctttt ttattaccta caacttcttt agcacttaaa cgaccatcat
     6421 cagttattgg aacaacgcca taatgcatat gtggtgtttt ttcgtccatg tgaactgttg
     6481 catataataa attatcttta ccgtattctt gttctaaaaa ctctttagca tattcaaaaa
     6541 actgctttgt atcttctggc gtttgattat caaagaaatc attgtctgat gtaattaaac
     6601 catcaatgtg tttaatcgcg tctgttctaa tttttctttt gcctgtataa ttctgttcga
     6661 ttttttcatc aatcaagtta ttaaaattct gtttattagc atttaccaaa tcataattta
     6721 agtaagtttt actatggtct atatcttcat tttcataatt attattttct ctttgaacat
     6781 gtttttgtat gcccgttgta tttgttccag atttaacttt tgaaactcta acaatggaat
     6841 aagacatata aaaatcactc ctaagcacaa aggtttcatg tgtatttaat agtttaagtc
     6901 taataacaca ctagacttat ttttaataag tcgttaatac gtgtgctctg cgaggcttaa
     6961 acctgttttt gctaacgcaa aaaatgagtg gcaaaatgct agccactcat agttctaaac
     7021 caaaatataa tataactatt caaactgctt ttcagaacgt ttaaatacaa taatcgtcaa
     7081 aagacaacat aaaataataa ggatagccat ggctacaaga atattactat acactccaga
     7141 agaataattt ataaattcca
//
