CP114001.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

CP114001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1	29,498
Region 2	NRPS	264,559	290,753

CP114001.1 - Region 1 - T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 29,498 nt. (total: 29,498 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 29498:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_1

PKS_AT (552..842): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 62.5%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 131.1
Methoxymalonyl-CoA: 50.8
Methylmalonyl-CoA: 45.2
inactive: 41.7
Benzoyl-CoA: 39.1
Isobutyryl-CoA: 32.4
Propionyl-CoA: 30.5
Acetyl-CoA: 28.3
fatty_acid: 25.1
2-Methylbutyryl-CoA: 23.5
3-Methylbutyryl-CoA: 19.7
CHC-CoA: 16.1
trans-1,2-CPDA: 10.5
Ethylmalonyl-CoA: 8.9

ctg1_4

Search NORINE for peptide: strict or relaxed

AMP-binding (20..422): diOH-Bz

nrpys: diOH-Bz

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
Large clusters prediction:: Hydroxy-benzoic acid derivates (diOH-Bz, Sal)
Small clusters prediction:: Hydroxy-benzoic acid derivates (diOH-Bz, Sal)
Single AA prediction:: dhb (diOH-Bz)

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVLCK
Nearest Stachelhaus code(s):: diOH-Bz PLPAQGVLCK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

CP114001.1 - Region 2 - NRPS