CP057424.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

CP057424.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	lassopeptide	1	19,729
Region 2	RiPP-like	41,459	52,994

CP057424.1 - Region 1 - lassopeptide

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Location: 1 - 19,729 nt. (total: 19,729 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

Lasso peptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Lasso peptide predictions

Lassopeptide(s) for ctg1_12

ctg1_12

Leader:

MIKHIHFDKLSSGKKNNVPHPAKGVIQIKKSASQLTK

Full core:

GGAGHVPEYFVGIGTPISFYG

Putative macrolactam:

GGAGHVPE

antiSMASH-DB 4.0 matches for ctg1_12

100.0% NZ_AP021947.1and 16 others:

NZ_CAJGEM010000015.1 Lassopeptides: JMT87_RS21655_lassopeptideNZ_CAJGGU010000008.1 Lassopeptides: JMU20_RS21490_lassopeptideNZ_CP010127.1 Lassopeptides: RG30_RS26380_lassopeptideNZ_CP031107.1 Lassopeptides: DUT84_RS26055_lassopeptideNZ_CP074577.1 Lassopeptides: KHZ70_RS24010_lassopeptideNZ_CP091672.1 Lassopeptides: L6L68_RS00080_lassopeptideNZ_CP097722.1 Lassopeptides: M9O79_RS23190_lassopeptideNZ_CP117571.1 Lassopeptides: PS035_RS23020_lassopeptideNZ_CP117612.1 Lassopeptides: PS038_RS23585_lassopeptideNZ_CP117622.1 Lassopeptides: PS039_RS24320_lassopeptideNZ_FZFT01000070.1 Lassopeptides: CPG75_RS26760_lassopeptideNZ_JABMLY010000084.1 Lassopeptides: HRQ70_RS23615_lassopeptideNZ_JZNY01000005.1 Lassopeptides: VE51_RS00690_lassopeptideNZ_JZOJ01000049.1 Lassopeptides: VE62_RS06215_lassopeptideNZ_MRDN01000066.1 Lassopeptides: BSF34_RS29250_lassopeptideNZ_OW968329.1 Lassopeptides: LQ108_RS23255_lassopeptide

Lassopeptides: H7R07_RS25795_lassopeptide

1

GGAGHVPEYFVGIGTPISFYG

21

GGAGHVPEYFVGIGTPISFYG

1

GGAGHVPEYFVGIGTPISFYG

21

52.4% NZ_CP016898.1: Lassopeptides: BEN76_RS17395_lassopeptide

1

GGAGHVPEYFVGIGTPISFYG

21

GG G +PEYF+ +G +FYG

1

GGKGPLPEYFL-MGGGGNFYG

20

33.3% NZ_CP077406.1: Lassopeptides: I6L51_RS27045_lassopeptide

1

GGAGHVPEYFVG

12

GG G + EYF+G

1

GGVGKIIEYFIG

12

with 5 more sequence matches

30.8% NZ_VYKJ01000032.1: Lassopeptides: FJU30_RS26370_lassopeptide

1

GGAGHVPEYFVGIGTPIS

18

GG G +PEYF P

1

GGDGGIPEYFEHSNPPTD

18

28.6% NZ_JADPRT010000002.1: Lassopeptides: I2501_RS04910_lassopeptide

1

GGAGHVPEYFVGIG

14

GG G VP++F +

1

GGLGTVPDWFFNMN

14

28.6% NZ_JAERJD010000009.1: Lassopeptides: allorf_022741_022872_lassopeptide

1

GGAGHVPEYFV

11

GG G + EYF

1

GGGGQIVEYFT

11

22.2% NZ_RBZW01000021.1: Lassopeptides: D8Y22_RS22300_lassopeptide

6

VPEYFVGIGTPIS

18

V E +GTPI+

11

VTEATAAVGTPIT

23

21.9% NZ_CP031746.1: Lanthipeptides: allorf_1813979_1814164_lanthipeptide

1

GGAGHVPEYFVGIGTPISF

19

G A VP +G G P+++

6

GCARWVPCSLLGAGCPVTW

24

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lasso peptides

Core peptide predictions

ctg1_12 - Class II: Cleavage pHMM score: 5.40; RODEO score: 21; Monoisotopic mass: 2106.0 Da; Molecular weight: 2107.3 Da; Number of bridges: 0

CP057424.1 - Region 2 - RiPP-like

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Location: 41,459 - 52,994 nt. (total: 11,536 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

Gene/CDS overview

Filter:

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA